BAC Information

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BAC

Clone NameMSMg01-447P20
Chromosome3 (Build37)
Map Location 132,356,865 - 132,527,249
singlet/doubletdoublet
Overlap geneA630047E20Rik, LOC668858
Upstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1
Downstream geneNpnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447P20.T7 (MSMg01no447_p20.b1)MSMg01-447P20.TJ (MSMg01no447_p20.g1)
ACCAG536309AG536310
length772760
length of high quality
(start - end)		509 (50 - 558)419 (80 - 498)
definitionCHROMAT_FILE: MSMg01no447_p20.b1 PHD_FILE: MSMg01no447_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:05 2005CHROMAT_FILE: MSMg01no447_p20.g1 PHD_FILE: MSMg01no447_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,356,865 - 132,357,370)(132,526,911 - 132,527,249)
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGCATGATTGCCACCACCCTGGTTTAGGAAGTGCAGGTGA
CTCAGTGCAGGGCATTGTACATTTTAGGAAGGCATCTGAACTCCAAGGCC
AGCTGGCTAGGGAATTCTCCCCTGAAGGCAAAGGTGGGCTCCAGAGGTCT
GCCATCCAGGAGAGTCCCAGGCTTGGTAAAATGTAGGAGCTTTTCATCTC
TAGCACTAAATAGTAGATGAGGAGAAAATACAAAAGAAGACTAATAAATT
ACAGGCAGAAGATGGGTAGCATTTCAGTTTGGGTGGATGGGGTGCTTACA
TAGAGGGGAGACTGAGAGGAGGAGCCAGATAGAAGTTAGGAAGACTGGTC
ACACGTGCACACGGTGAAAATGGATAGTACTTAAAATATTGTTTTTGTAC
TGCATGTTAGTAACTTTAGAGGGATATATGTACTTGTTATTAAAGTATGT
TAATTATAAAGTAGATTTGCTTTGTTTTTCTCAGAAAGACTGGTGGTGGT
GGCGGAGCACTGTGAGCGCAGTTTGGAGACCTTCTACGAGAAGGAAGCCT
GTGAGGTAAAGTGTGAAACAAAAGGTGGAAAGTGGGAATCCGTAACCCCA
AAAGAATCTGAATGAAAAATGAAAGGGCCCGGCTTCTCTTAATGTTCTTA
AAGAGAACCATTTCTTGGGGGCTTTTACCTAAAAATTTAATTTACTGGGT
CATAAGAATCTCCCGGAAATAT

NNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCACACCCTGAGCACTGT
CCTGACCCCCGCAGCCGTCCCTCCATCCCTCCATGCCTCCCACAGAGGAC
TTGCTGATTTCGAAGTACCTTGAATCACAATCTTCCATGGCTGGCAACAA
AAGCATCATGGGGAATCCACCCACGATTAATGAGCTTGCACTTGTGCCAG
ACATGGCGACTCCGTGCGTGTTACTTTGTCCTCACACAACCCCAGTCAGA
TACCATTTTCCCACTTGATTGCAAAAGGAGGCTCAGAGGCCAGGGAAGGT
TGAGAAACCTGCGTAGGTTACAAAGGCGCTGAGGAGCTGTTCCTGTTTGT
GTAAAGGCAGACCTTCTGGCTGCAGGGCTGCTCCTCGCACGTTTCCACTG
GAATATCAGGTAGCACGTGGGATTGCTTGGGTGATACATCTGTCTGGGAG
ATATTAACAGGATCTGAGGATAGTTCTAGTCGTGATTCTGAAAAGGAAAG
ACCTGTTTTTCCTGGGCTCTTTACAGAAGGAAAATGTGAGGATGGGGGCC
TGCCCAGCATATAGAAAAAATGAGGGAGAAAGTCCAAAACCCCCGCTCCT
GGTTCAGAATTATGTGGGTAAAAAAACAAGGGGTTCTACCCCTTTTAAAC
TCTTTCTGTGGTCAAGCTCCAAGGGTCTTCATGTTTTTTTCATTTATTGC
TTCTTAACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_p20.b1 MSMg01no447_p20.b1 CHROMAT_FILE:
MSMg01no447_p20.b1 PHD_FILE: MSMg01no447_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:05 2005
         (509 letters)



>mm_chr3_132356662_132357570
          Length = 909

 Score =  955 bits (494), Expect = 0.0
 Identities = 503/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggcatgattgccaccaccctggtttaggaagtgcaggtgactcagtgcaggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggcatgattgccaccaccctggtttaggaagtgcaggtgactcagtgcaggg 263

                                                                       
Query: 64  cattgtacattttaggaaggcatctgaactccaaggccagctggctagggaattctcccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattgtacattttaggaaggcatctgaactccaaggccagctggctagggaattctcccc 323

                                                                       
Query: 124 tgaaggcaaaggtgggctccagaggtctgccatccaggagagtcccaggcttggtaaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaaggcaaaggtgggctccagaggtctgccatccaggagagtcccaggcttggtaaaat 383

                                                                       
Query: 184 gtaggagcttttcatctctagcactaaatagtagatgaggagaaaatacaaaagaagact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaggagcttttcatctctagcactaaatagtagatgaggagaaaatacaaaagaagact 443

                                                                       
Query: 244 aataaattacaggcagaagatgggtagcatttcagtttgggtggatggggtgcttacata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aataaattacaggcagaagatgggtagcatttcagtttgggtggatggggtgcttacata 503

                                                                       
Query: 304 gaggggagactgagaggaggagccagatagaagttaggaagactggtcacacgtgcacac 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaggagagactgagaggaggagccagatagaagttaggaagactggtcacacgtgcacac 563

                                                                       
Query: 364 ggtgaaaatggatagtacttaaaatattgtttttgtactgcatgttagtaactttagagg 423
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 564 ggtgaaaacggatagtacttaaaatattgtttttctactgcatgttagtaactttagagg 623

                                                                       
Query: 424 gatatatgtacttgttattaaagtatgttaattataaagtagatttgctttgtttttctc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatatatgtacttgttattaaagtatgttaattataaagtagatttgctttgtttttctc 683

                                     
Query: 484 agaaagactggtggtggtggcggagc 509
           ||||||||||||||||||||||||||
Sbjct: 684 agaaagactggtggtggtggcggagc 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no447_p20.g1 MSMg01no447_p20.g1 CHROMAT_FILE:
MSMg01no447_p20.g1 PHD_FILE: MSMg01no447_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:05 2005
         (419 letters)



>mm_chr3_132526911_132527729
          Length = 819

 Score =  609 bits (315), Expect = e-178
 Identities = 333/339 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcacaccctgagcactgtcctgacccccgcagccgtccctccatccctccatgcctc 60
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 339 actgcacaccctgagcaccgtcctgacccccgcagccgtccctccatccctccacgcctc 280

                                                                       
Query: 61  ccacagaggacttgctgatttcgaagtaccttgaatcacaatcttccatggctggcaaca 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccatagaggacttgctgatttcgaagtaccttgaatcacaatcttccatggctggcaaca 220

                                                                       
Query: 121 aaagcatcatggggaatccacccacgattaatgagcttgcacttgtgccagacatggcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aaagcatcatggggaatccacccacgattaatgagcttgcacttgtgccagacatggcga 160

                                                                       
Query: 181 ctccgtgcgtgttactttgtcctcacacaaccccagtcagataccattttcccacttgat 240
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 159 ctccgtgcgtgttacttcgtcctcacacaaccccagtcagataccattgtcccacttgat 100

                                                                       
Query: 241 tgcaaaaggaggctcagaggccagggaaggttgagaaacctgcgtaggttacaaaggcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 99  tgcaaaaggaggctcagaggccagggaaggttgagaaacctgcgtaggttacacaggcgc 40

                                                  
Query: 301 tgaggagctgttcctgtttgtgtaaaggcagaccttctg 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  tgaggagctgttcctgtttgtgtaaaggcagaccttctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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