BAC Information

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BAC

Clone NameMSMg01-448F04
Chromosome3 (Build37)
Map Location 141,478,469 - 141,478,945
singlet/doubletsinglet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448F04.T7 (MSMg01no448_f04.b1)MSMg01-448F04.TJ (MSMg01no448_f04.g1)
ACCAG536565AG536566
length731741
length of high quality
(start - end)		601 (72 - 672)477 (73 - 549)
definitionCHROMAT_FILE: MSMg01no448_f04.b1 PHD_FILE: MSMg01no448_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:34 2005CHROMAT_FILE: MSMg01no448_f04.g1 PHD_FILE: MSMg01no448_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATATCAAACTCCCAATGAATTCAAGGTGTGCTGAGGCTCCCCT
TGTTGCTTCCTGTAATTTGACTGAAACTGAAACAGGTCATGTGTGTACAC
AGCACCATGTATGCTGTCATGATGGTGGCTATGAGCACACGCTTCATTCA
CATGACTCAGACTGAAGACTTTCATGTGCTTTGAATGGCGGGGTTTTCAT
ATACATGCAAAGTTTTTTCTCCTTAGAAATTAATTTTAATTAACAAATGT
TTTAGTAGTTCCTTATGTCATTAATTGTCAGATGAATTTAATTAATTCAA
CTAAGTATCAAAGCAACAATTTCTAAATCAACTCTAAGTGTACTTCTGCC
ACCCTGTGCTATATATTTCTGCAAAGTGACCTTCTCAGCATCAACAATTA
CATAATTAAAATATTGACCTGAAAAACACTGAAAAACACTGAAAATGCTC
CTTCCCTACCCTGCAGTATCAACTACTCTACCAATATTTAATTCATTATG
TAAATATATTCAAACACATTTATGTCATTAGTGTTCAGATTTGTTTTAAT
CATTAACAGATGGTAAATTTATATATACCAAAGAATTGTTTTAAAATTGT
TTACATTGACTTTATAATTTGCCATCAGTAAATATTTGTTCTGTGTACCT
GTTTTATATTTCTCTCTAATACATGGATCAT

AATACCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTGCAAAATTCCTTCTTGTTTGCAGAAATATCACT
GCCAAAGACAGCCATATTTTGCTTTATGTTATTTATAATTATGGTTATTT
TCCTGAATCCCCACTTTTAAAAGGTCATGAATTATACAATATTTTAATCA
TAAAAATTTTGGTAGCATGAGAGCTATACAAGGGAGGTTCATTTCATGCA
TTGGTATTAATAACTTACAGTAAGCTGCTGTTTGGATAATTTCAGCTGTA
GTTGGAAATGCTTCATTATGTTTTATTAAGCAGCTTGAAGAATGGAAGTG
AATATAGACTTTGTCTTTCTGTAACATCTTTATACTGTAAATGAAGGGTG
GATTGGGGTTTCTTCACCTAGAAATTTTTAGAGATGGGGCAGTCTCTTTT
AAAATCTAATCTGGATAGGTGTTTGGTTCAGAAAATATTGTTTTCAATTG
TCATTATCTGAATGCAAAGGTTTCTCTAATAGGATATATATAATAGGCTC
AGTTGGTAAAGTTTCTGGCCATGAAGTCCAAAAGCCTATGGTACTAAACA
TATTGAGTATTATAGCATATGCTTCCTAAACCCAAAACCATGTAAACAGA
TTATTTTTCCTTCTGAGTCCCTTTGACTAACCTATTTGAAAACACCCATG
TCTAGTGTATACCCCCTATTTCTCAACAACATGTTATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_f04.g1 MSMg01no448_f04.g1 CHROMAT_FILE:
MSMg01no448_f04.g1 PHD_FILE: MSMg01no448_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:34 2005
         (477 letters)



>mm_chr3_141478269_141479145
          Length = 877

 Score =  861 bits (445), Expect = 0.0
 Identities = 469/477 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccttcttgtttgcagaaatatcactgccaaagacagccatattttgctttatgttat 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 attccttcttgtttgcagaaatatcactgccaaagacaaccatattttgctttatgttat 260

                                                                       
Query: 61  ttataattatggttattttcctgaatccccacttttaaaaggtcatgaattatacaatat 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ttataattatggttattttcctgaattcccacttttaaaaggtcatgaattatacaatat 320

                                                                       
Query: 121 tttaatcataaaaattttggtagcatgagagctatacaagggaggttcatttcatgcatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tttaatcataaaaattttggtagcatgagagctatacaagggaggttcatttcatgcact 380

                                                                       
Query: 181 ggtattaataacttacagtaagctgctgtttggataatttcagctgtagttggaaatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtattaataacttacagtaagctgctgtttggataatttcagctgtagttggaaatgct 440

                                                                       
Query: 241 tcattatgttttattaagcagcttgaagaatggaagtgaatatagactttgtctttctgt 300
           |||||| ||   ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 tcattaagtcccattaagcagcttgaagaatagaagtgaatatagactttgtctttctgt 500

                                                                       
Query: 301 aacatctttatactgtaaatgaagggtggattggggtttcttcacctagaaatttttaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacatctttatactgtaaatgaagggtggattggggtttcttcacctagaaatttttaga 560

                                                                       
Query: 361 gatggggcagtctcttttaaaatctaatctggataggtgtttggttcagaaaatattgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatggggcagtctcttttaaaatctaatctggataggtgtttggttcagaaaatattgtt 620

                                                                    
Query: 421 ttcaattgtcattatctgaatgcaaaggtttctctaataggatatatataataggct 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaattgtcattatctgaatgcaaaggtttctctaataggatatatataataggct 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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