BAC Information

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BAC

Clone NameMSMg01-449C03
Chromosome3 (Build37)
Map Location 43,820,885 - 43,821,133
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677788, LOC100039264
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449C03.T7 (MSMg01no449_c03.b1)MSMg01-449C03.TJ (MSMg01no449_c03.g1)
ACCAG537180AG537181
length746751
length of high quality
(start - end)
494 (80 - 573)249 (83 - 331)
definitionCHROMAT_FILE: MSMg01no449_c03.b1 PHD_FILE: MSMg01no449_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:39 2005CHROMAT_FILE: MSMg01no449_c03.g1 PHD_FILE: MSMg01no449_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGAACTTTTTAGCCGGAAAACGAGAGTACCAGTGAGTACA
GCTTTACGAGGTAAGTCTGATCTTGAACTTTCTAACGAAATTCAAGACAG
TCTATCAGAAGTAAAGTGGAAAATAGCTTTATAAGGTATGTTTGGCCTTG
AATTTTTTCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAA
GTGGTTAAGGCAGGGCGGATTCTGGATGAAATTCAGGGCAATCTATCAGA
AGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGAAAATATGGTACACAAA
ATAAGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTTAGG
TCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAAAAGAAAAAAGA
AAAGAAAAAACATCAATTAGCGGAGGTCTCTAGGAAAAGGAGCCTGTGGG
CATCGCTGGATGGGCTCGGNGAGCCAGCTCTTGGTAGCTCTGAATCAGAT
GATGAATTCTCCTCTGAAGAAACACACTGGGAGGAAGAAGCAGCTCATTA
TGAGAAAAAAGGGTACCAGCCAGGTAAGGTGCTAGCTAATCAGTTAAGGA
AGCCCAAAGCGACTGGTGAATGCCAGTTTTGCTGATTGGCCTCGGGACAT
TCGGCTTCTATGTCCGCCGTAAGTCGAAATCCCGTCCCTGCGTAAG
NGGCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATATATTTATATAATT
TAAATGTTTGTATTTGTATTTTTGATGTGCAAATAATACTTTGATTTCTC
TGTATCGTGTTTTTTAAATAGAAGCTAATAAGCGGGGAAGTAGATGTACA
ACCTAAAAGGGCCATTTTCGTTTTTTCTCATAATAAAGCTGGCTTTTTGA
TGTCCTGAATAATATTCATTATTGAATCTCATGACACCAGACAAAGATGA
AATGGACAGTGGAAATGAATGTAGTGATCAAATTGTTGAAGCAAAACAAC
TTCAGATTTTGGGAAGAATAAATTTTCAAAGCCAGGAAAGGTTTCCAGTG
GTTGAAGTGGGACACCAAATCTGCCACAAAAACTTTCATCTCTAACCTAT
CCTGCCTGCAAGATGTGCTAGGGCAATGGTGCCTAATAGCTTGAGGAACT
AGTCTGACTTGAGACCCATGACACTAGAGGAGTACAAGCCTGGCATGGCC
AAGATGGAACCAGAAGTTGGATGGCCCAGAGACCTGAGTTACTACCAATG
AAACTTGCCATAAACAACAACAAGCCAATAAATTCATTCCTATGATATTC
TGTTATATTCATCAATCGGCACCCTTGCCCTATTTGTCACCATAAAGGTT
TCAGTCAGAAACCTCATGAGAGTATAATGTTGATATTCTTTTTCCCTACT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_c03.g1 MSMg01no449_c03.g1 CHROMAT_FILE:
MSMg01no449_c03.g1 PHD_FILE: MSMg01no449_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:39 2005
         (249 letters)



>mm_chr3_43820662_43821310
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatatttatataatttaaatgtttgtatttgtatttttgatgtgcaaataatacttt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 472 aaatatatttatataatttaaatgtttgtatttgtattttggatgtgcaaataatacttt 413

                                                                       
Query: 61  gatttctctgtatcgtgttttttaaatagaagctaataagcggggaagtagatgtacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gatttctctgtatcgtgttttttaaatagaagctaataagcggggaagtagatgtacaac 353

                                                                       
Query: 121 ctaaaagggccattttcgttttttctcataataaagctggctttttgatgtcctgaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctaaaagggccattttcgttttttctcataataaagctggctttttgatgtcctgaataa 293

                                                                       
Query: 181 tattcattattgaatctcatgacaccagacaaagatgaaatggacagtggaaatgaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tattcattattgaatctcatgacaccagacaaagatgaaatggacagtggaaatgaatgt 233

                    
Query: 241 agtgatcaa 249
           |||||||||
Sbjct: 232 agtgatcaa 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)