NNNNNAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTCTGCATTTGTCAATGCTTTCTTTAAGTTTAAGGAG
ATGATGTACAAATGTCTGACTTTAATTAATCAGGATTTCTTCAGGGGTCG
TAGTCAACTGTTAGGAAGATATAATAAATAATTTTCATAGATCTATTCAA
TTCTATCAGCGGTATCAATGAAGCTGAAACCAGCGTGGTTTTTTGTTTGT
TTGTTTGTTTGTTTGTTTTTCCACTTGTAAACCCTGCACACAGAGCAGGA
TGGTAAGAAAAAACACAGAGGATCTAGTATCAAAAACAATGAATTCAAAC
CCATTGAGTTCCTGGCTTCCAGTTTTGAGCAACCCTTGAATCTTTTTCCA
TATCTGCAAAACATGTAAGTTTCCCAGACACAAATGTCTGTGCTATAATC
TGTCATTGGGAGACTGTCCTTGAAGTTCATAGTTCTGAATTCAAATGTCT
TCATTGAGCCCCTTGAACTAAGCCCATTTCTCCATCTAATGGATGGTCGC
AGGAACTACCTCATAGGATGATGGAAACATAGAAAGTGTAGACCCTCGGT
CACTGAAGGAAGCATCATAGCTTCTAGGAGATATTTGTGAATTGACTGAA
TGTGTTGAATGAATATACTTATGGATGGTTTTTTTTAGATGAAACACTGT
GACAAGGGTGACTTAAGGGGGAAAGTCATCTTTTCTCACAG

NAATTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTCCTTCCTATCA
GAGCTAAGGCTAAAGACATGCTCTACTGCACCTGCCCCTTTCTGTGTTGC
CTGTTTGAGATCCAAACACAGGTCTTTCTCCTTGTGGGACCAGGACTTTA
CCAACTCAGCCATCTCCACAGTCCAAGAATCCCTTACTTATTTATCTGCT
TGTTTGTTTTTATGTGTGGGTGTTTTGCCTGAATGTATAACTGTGCACTA
TGTACATTCCTGGTGGCTGCAGAGGCCAAAGGAATTTTTTAGATCCCCGG
AACTGAGTCATAGACAGTTGTGAGCCACCGTGTCTGTGCTGGGGATTAAT
CCATCCTGATCCTCTGGAAGAAGAGCCAGTGCTCTTAACTGCTGAGCCAT
CTCCCCAGCCACAAGAATTCCTTTTTAAAATATGACAAAGAGGAAGCACC
AGTGAGGGCTTCTGGTAGGAATGTTTAGTGTACAGATGAAAATGTGGGCT
TAGGGCCAAGGAATTCACAGACCATCAGGAAAAAAGCCTTCACTAAGAGT
CAACCCTATAGAGTATGCATGTGGAGAGAGGAAAAGATAAGGAAAAAATT
CCGATTTATTATGCGGAGAAAGTCCATTGTCCAAGATGAATGAAGCCAAT
TATTTTGGTTTTCACAATTTCCCTCCGTTTTTTTTTTTTTATTAAAGGGA
ATTTTAAGGCTA

Query= MSMg01no449_e23.b1 MSMg01no449_e23.b1 CHROMAT_FILE:
MSMg01no449_e23.b1 PHD_FILE: MSMg01no449_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:54 2005
         (599 letters)



>mm_chr3_144895848_144896846
          Length = 999

 Score =  919 bits (475), Expect = 0.0
 Identities = 558/607 (91%), Gaps = 36/607 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctttctttaagtttaaggagatgatgtacaaatgtctgactttaattaatcaggatttc 60
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gctttctttaactttaagaagatgatgtacaaatgtctgactttaattaatcaggatttc 276

                                                                       
Query: 61  ttcaggggtcgtagtcaactgttaggaagatataataaa----------taattttcata 110
            |||||||||||||||||||||||||||| |||||||||          |||||| ||||
Sbjct: 277 ctcaggggtcgtagtcaactgttaggaaggtataataaagagttgcgtttaatttgcata 336

                                                                       
Query: 111 gatctattcaattctatcagcggtatcaatgaagctgaaaccagcgtggttttttgtttg 170
           ||||||||||||| ||||||| |||||||||||||||||||||||     |||||     
Sbjct: 337 gatctattcaattgtatcagcagtatcaatgaagctgaaaccagc----attttt----- 387

                                                                       
Query: 171 tttgtttgtttgtttgtttttccacttgtaaaccctgcacacagagcaggatggtaagaa 230
                           ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 388 ----------------ttttt-cacttgtaaaccctgaacacagagcaggatggtaagaa 430

                                                                       
Query: 231 aaaacacagaggatctagtatcaaaaacaatgaattcaaacccattgagttcctggcttc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaaacacagaggatctagtatcaaaaacaatgaattcaaacccattgagttcctggcttc 490

                                                                       
Query: 291 cagttttgagcaacccttgaatctttttccatatctgcaaaacatgtaagtttcccagac 350
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagttttgagcaactcttgaatctttttccatatctgcaaaacatgtaagtttcccagac 550

                                                                       
Query: 351 acaaatgtctgtgctataatctgtcattgggagactgtccttgaagttcatagttctgaa 410
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acaaatgtttgtgctataatctgtcattgggagactgtccttgaagttcatagttctgaa 610

                                                                       
Query: 411 ttcaaatgtcttcattgagccccttgaactaagcccatttctccatctaatggatggtcg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttcaaatgtcttcattgagccccttgaactaagcccatttctccatctaatggatggtcg 670

                                                                       
Query: 471 caggaactacctcataggatgatggaaacatagaaagtgtagaccctcggtcactgaagg 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 671 caggaactacctcataggatgatggaaacatagaaagtgtagaccctcggtcactaaagg 730

                                                                       
Query: 531 aagcatcatagcttctaggagatatttgtgaattgactgaatgtgttgaatgaatatact 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aagcatcatagcttctaggagatatttgtgaattgactgaatgtgttgaatgaatatact 790

                  
Query: 591 tatggat 597
           || ||||
Sbjct: 791 tagggat 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)