Query= MSMg01no449_f18.b1 MSMg01no449_f18.b1 CHROMAT_FILE:
MSMg01no449_f18.b1 PHD_FILE: MSMg01no449_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:58 2005
(387 letters)
>mm_chr3_66243175_66243961
Length = 787
Score = 725 bits (375), Expect = 0.0
Identities = 381/383 (99%)
Strand = Plus / Minus
Query: 1 gggggttaaaccataactacattgaagttaggctgctcgaattctcgttcctttctgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gggggttaaaccataactacattgaagttaggctgctcgaattctcgttcctttctgtgt 524
Query: 61 ggcttctctttacaatttcttttgtttagcccctctcctcaaatgctgattcttgcatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggcttctctttacaatttcttttgtttagcccctctcctcaaatgctgattcttgcatgt 464
Query: 121 gcatgcttgtttttgactagatttctccagggcccaggtgataactgatgctaccaacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcatgcttgtttttgactagatttctccagggcccaggtgataactgatgctaccaacct 404
Query: 181 tgatatacctccttgccaggtagtgtaagcgtgtactctgtctatcatcttgaactaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgatatacctccttgccaggtagtgtaagcgtgtactctgtctatcatcttgaactaaaa 344
Query: 241 cctaatgttttcttctgccttctctggccccttaggaaatgtcatgtgaaaataaagaaa 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cctaatgttaccttctgccttctctggccccttaggaaatgtcatgtgaaaataaagaaa 284
Query: 301 gggaagggcaggggtctgaggggtagggggtcagcaatgaagggataggaagggaggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gggaagggcaggggtctgaggggtagggggtcagcaatgaagggataggaagggaggagg 224
Query: 361 tcgaagggaaggggataagagag 383
|||||||||||||||||||||||
Sbjct: 223 tcgaagggaaggggataagagag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_f18.g1 MSMg01no449_f18.g1 CHROMAT_FILE:
MSMg01no449_f18.g1 PHD_FILE: MSMg01no449_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:58 2005
(518 letters)
>mm_chr3_66096203_66097121
Length = 919
Score = 932 bits (482), Expect = 0.0
Identities = 509/524 (97%), Gaps = 11/524 (2%)
Strand = Plus / Plus
Query: 1 caggaatgcagcggaagccaccggctgctccctgggcgggtcaggtgaccggctgctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 caggaatgcagcggaagccaccggctgctccctgggcgggtcaggtgaccgactgctctg 260
Query: 61 gctccagggcagagctacctccaagcacaaaggcagctccagtaaaccagagctgctgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctccagggcagagctacctccaagcacaaaggcagctccagtaaaccagagctgctgta 320
Query: 121 gaccgagaagacagaacgccctgtgttcgtggaaatctacactttcttccgagatcgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccgagaagacagaacgccctgtgttcgtggaaatctacactttcttccgagatcgggt 380
Query: 181 gggggcggggaagccacgcaggaagccggtctggttggtaggccagctggagccggtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggcggggaagccacgcaggaagccggtctggttggtaggccagctggagccggtgat 440
Query: 241 ggtatgttttt------gcccccagcgggagcaggaaacttagtgagacacaggagttca 294
|| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatg-----accggggcccccagcgggagcaggaaacttagtgagacacaggagttca 495
Query: 295 aaacagagagccttgtgtaggtagagtcacagcctggaagaaatgaccctctcgccctgc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaacagagagccttgtgtaggtagagtcacagcctggaagaaatgaccctctcgccctgc 555
Query: 355 ctctagatgaatggcagtgaaagtttgaggataccaagagttacaagtggagggaacaaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctctagatgaatggcagtgaaagtttgaggataccaagagttacaagtggagggaacaaa 615
Query: 415 ctggttctaccaaaccacacaactttgcactccatttggtagaatttgggaggttctgcc 474
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 616 ctggttctaccaaaccacacaactttgcactccatttgctagaatttgggaggttctgcc 675
Query: 475 tgacccatctacatcagtggcttcctaatgatgacaccctttaa 518
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 676 tgacccatctacatcagtggcttcctaatgacgacaccctttaa 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space: 461772
Effective search space used: 461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
