Query= MSMg01no449_m01.b1 MSMg01no449_m01.b1 CHROMAT_FILE:
MSMg01no449_m01.b1 PHD_FILE: MSMg01no449_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:27 2005
(597 letters)
>mm_chr3_19611511_19612507
Length = 997
Score = 1116 bits (577), Expect = 0.0
Identities = 592/597 (99%)
Strand = Plus / Minus
Query: 1 ctacattaattaacttcctatatttgtgctgaattttttacccttggatttgactcttaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 797 ctacattaattaacttcctatatttgtgctgatttttttacccttggatttgactcttaa 738
Query: 61 ttttctgtgttaagtatcatgttttctgaatgttaagagttctttctctggaattacttg 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttttctgtgttaaatatcatgttttctgaatgttaagagttctttctctggaattacttg 678
Query: 121 atggacttgggtacattgttcatttcccataaacagggctgctccaatgtgcatggaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atggacttgggtacattgttcatttcccataaacagggctgctccaatgtgcatggaacc 618
Query: 181 ttagatgagctttaaacaaattatttaattagaataggtaccaggcatgtcctggtgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttagatgagctttaaacaaattatttaattagaataggtaccaggcatgtcctggtgtgg 558
Query: 241 tcatttgtggtcatggcacttaagagaagggggtttgagtatgatgaatttgaggcaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcatttgtggtcatggcacttaagagaagggggtttgagtatgatgaatttgaggcaatc 498
Query: 301 aggctacatagcaaaattttgtcttgaagaataaattattttttaaatgacaagtataaa 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aggctatatagcaaaattttgtcttgaagaataaattattttttaaatgacaagtataaa 438
Query: 361 agcattatatagctcacgatcccatattgggatacagtattctgctgaaaacaacttaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agcattatatagctcacgatcccatattgggatacagtattctgctgaaaacaacttaaa 378
Query: 421 ataatgaagatgagatcataatatttattattttgtgagtatataaaaattcttcatagt 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 377 ataatgaagatgagatcataatatttattactttgtgagtatataaaaattcttcatagt 318
Query: 481 gtctgatcacaatcttgattggtaactacaccattttttgaatagttttatactcctacc 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtctgatcataatcttgattggtaactacaccattttttgaatagttttatactcctacc 258
Query: 541 acaaaagaaaaaaatatgtttatagtgtcaagtatttaggaacatgtggtcactgaa 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acaaaagaaaaaaatatgtttatagtgtcaagtatttaggaacatgtggtcactgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_m01.g1 MSMg01no449_m01.g1 CHROMAT_FILE:
MSMg01no449_m01.g1 PHD_FILE: MSMg01no449_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:27 2005
(486 letters)
>mm_chr3_19458692_19459577
Length = 886
Score = 783 bits (405), Expect = 0.0
Identities = 471/503 (93%), Gaps = 17/503 (3%)
Strand = Plus / Plus
Query: 1 catatctgatcttttacctgattagtacatctatgcatacaaactttataaattaggtca 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 catatctgaccttttacctgattagtacatctatgcatacaaactttataaattaggtca 243
Query: 61 gaaaagtgactttaaacaataacagtaacaacgaaaatcatggggaaggagagagtatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gaaaagtgactttaaacaataacagtaacaacgaaaatcatggggaaggagagagtatgg 303
Query: 121 gtt-ttgagttgctgcaaatatccagtttgaaatgtccagttttcaaaataaattataag 179
||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 304 gttgttgagttgctgcaaatatccagtttgaaatgtccagtttttaaagtaaattataag 363
Query: 180 aacaagtgtgtacacagggaaaattcagctagagaatagggaggagagctgtgccata-- 237
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aacaggtgtgtacacagggaaaattcagctagagaatagggaggagagctgtgccatagg 423
Query: 238 --------------ggaaagctgtgttttgtgagagttgtgacatgggagagctgtgaca 283
||||||||||| | || ||||| |||||||||||||||||||||||
Sbjct: 424 agagctgtgccatgggaaagctgtgctatgggagagctgtgacatgggagagctgtgaca 483
Query: 284 tgagagagctgtgacatgggagagctgtaacatgggagagctgtgccatgggagagctgt 343
|| |||||||||| ||||||||| |||| ||||||||| ||||||||||||||| ||||
Sbjct: 484 tgggagagctgtgccatgggagatctgtgccatgggagatctgtgccatgggagatctgt 543
Query: 344 gccatgggagagctgtgccatgggagagctgtgacatcagacaactgtgaaatactgtct 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gccatgggagagctgtgccatgggagagctgtgacatcagacaactgtgaaatactgtct 603
Query: 404 tctagatatgctatgcctgctgctcatataaactcatgaaagccatggttacttgcacaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tctagatatgctatgcctgctgctcatataaactcatgaaagccatggttacttgcacaa 663
Query: 464 gatttgaagaaagttaagccagt 486
|||||||||||||||||||||||
Sbjct: 664 gatttgaagaaagttaagccagt 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
