BAC Information

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BAC

Clone NameMSMg01-449P19
Chromosome3 (Build37)
Map Location 139,661,130 - 139,661,476
singlet/doubletsinglet
Overlap genenone
Upstream geneRap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883, LOC621343, 4930590L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449P19.T7 (MSMg01no449_p19.b1)MSMg01-449P19.TJ (MSMg01no449_p19.g1)
ACCAG537826AG537827
length766765
length of high quality
(start - end)		424 (55 - 478)425 (86 - 510)
definitionCHROMAT_FILE: MSMg01no449_p19.b1 PHD_FILE: MSMg01no449_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:45 2005CHROMAT_FILE: MSMg01no449_p19.g1 PHD_FILE: MSMg01no449_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGGTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGCTT
ATTTGATTTTCTGAAGTCCACCTAAAAATGTATTTTAAACTGCGTGATTA
GAGTGAACATAAAAAGTCCTAAGCCAGTATTATTATACGAAGCCAATGAG
GCTTTTGAATACCATATAAAGTGGAGGTTACTAAACTAATACTTTAACTT
AGTATTTTCTGTCTTACCCTCTTTTCAGTACTTTTCTGATCAATCAGCCT
TGCTCATGATGATTATCAAAATAGTCAGAATATACACTTTCATTTATCTC
CGATCTAAATTAAAAGAAGTAAAAATAGCCATTCACGTGAAATATAACAT
ACATTGGCAATTACATTTTAACTACATTTTCTGATAACTTTGGCAAGGGT
CAAGTGACATGTATGCAGTGAAATCTTGGGTCTCTTTTAGTTGACAAGGA
TTAGGGGATCTACACTCTTAGAATTAATTCATGGGTGAAATTCTTTAAAA
AACTTTTTATTAATTAATTATTTTACTCCTTTACTGGCAAAAGTGGCCTC
CTCCCCAGCCCCCCCTCTAAAGGTCTCCCCCATCCCTTTTTGCTTTGAAG
CTGAAAAGAGGGGCCCCCTATTATTTTCCCCCCCTGGGGCCCCCGAGCCT
CTAAGGGTAAGGTCTTGGGCTCTACCCAAAGCCAAACAAGGGGACCCTCT
TTTACAGGGCCCTTGG

NAAAATTTCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAACAGCTCTC
TTAGATGATCTTAGCTCATGGACATACTTTTATTCGGAGTGGGCTTGTCC
ACATACACTTTATTTGGGGTGAGTCCAGAGTATTTATGGACCTTGGAGAG
TGGAAAGGTAAGTAGAAATAGAGTTTTCAGGGTAAATAGAAAAACATTGG
GTAGAGTTTAAAGTTCTGTGAATGCCTCATTTGCATGAAAAGGCATTCCA
GGAACTCTGCATTGTAGCTGCTGGAGGTCTGCCAAGGTCTACTCAGCCTT
CCTCAGGTAGAGGATGCTGGGAGGTCAGAGAAGGGGCAGCCTTTGGGGTA
AAGAGAGTCCATCATGTTGCACTGAGCTCAGAGAAACTATCTAGTCATGG
TAGACTTTGACCTTAATTAGCAGAGTATCCCCACACCTACATATTATTTA
TACTTTCTGAACACAATGCCAGCAATGGAGCTACCGTTTGACCCACTTTC
TGTCTTTTTCTTAGGAAAATCTGGTTGAAAACACCCAAAAAAAAAAAAAA
AAAAGCTAATCTGAGAAAAAAACTGGGGGAAAAACTGGTGGGCCCTTATT
TTCCGGACCCAAGAAGGAACCTGGCGGGAACACCTCCAAAGTTGGGGCTT
AAAAAATTTTTTCCCCCCCCGAAATTTTTTCTCTTGAGGGGGGGTTTATA
ACCCCCCCGTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_p19.b1 MSMg01no449_p19.b1 CHROMAT_FILE:
MSMg01no449_p19.b1 PHD_FILE: MSMg01no449_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:45 2005
         (424 letters)



>mm_chr3_139660853_139661676
          Length = 824

 Score =  617 bits (319), Expect = 0.0
 Identities = 340/347 (97%)
 Strand = Plus / Minus

                                                                       
Query: 78  attttaaactgcgtgattagagtgaacataaaaagtcctaagccagtattattatacgaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attttaaactgcgtgattagagtgaacataaaaagtcctaagccagtattattatacgaa 565

                                                                       
Query: 138 gccaatgaggcttttgaataccatataaagtggaggttactaaactaatactttaactta 197
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gccaatggggcttttgaataccatataaagtggaggttactaaactaatactttaactta 505

                                                                       
Query: 198 gtattttctgtcttaccctcttttcagtacttttctgatcaatcagccttgctcatgatg 257
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 gtattttctgtcttaccctcttttcagtacttttctgatcagtcagccttgctcatgatg 445

                                                                       
Query: 258 attatcaaaatagtcagaatatacactttcatttatctccgatctaaattaaaagaagta 317
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 attatcaaaatagtcacaatatacactttcatttatctctgatctaaattaaaagaagta 385

                                                                       
Query: 318 aaaatagccattcacgtgaaatataacatacattggcaattacattttaactacattttc 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaatagccattcacgtgaaatataacatacattggcaattacattttaactacattttc 325

                                                          
Query: 378 tgataactttggcaagggtcaagtgacatgtatgcagtgaaatcttg 424
           |||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct: 324 tgataactttggcaagagtcaagcgacatatatgcagtgaaatcttg 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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