BAC Information

Click to search

BAC

Clone NameMSMg01-450C08
Chromosome3 (Build37)
Map Location 38,653,366 - 38,808,320
singlet/doubletdoublet
Overlap geneFat4
Upstream gene4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450C08.T7 (MSMg01no450_c08.b1)MSMg01-450C08.TJ (MSMg01no450_c08.g1)
ACCAG537945AG537946
length744735
length of high quality
(start - end)		124 (94 - 217)518 (73 - 590)
definitionCHROMAT_FILE: MSMg01no450_c08.b1 PHD_FILE: MSMg01no450_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:58 2005CHROMAT_FILE: MSMg01no450_c08.g1 PHD_FILE: MSMg01no450_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,808,197 - 38,808,320)(38,653,366 - 38,653,883)
sequence
CTTCTCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCAATGAAGGCGC
NGGAANCANTTGCTTCCCAAAACACAACTCNANGCCTTAAGNTTATCAAC
TCCAATTATTACTATGGAATTTCACAAGTTCATAGACTAATCACTAGAGT
CACTTTACACGCTCTTAAAATGTATTTCGTATAATTACTTAGTGTAATAC
TGATACAATCCTTAAAATTGTTTATTCATTATTTGTCCTACATTCAAAAA
TATCTTTGGTCTTTTTTTCCCTAGGAAAAAAAACTTATATTTTATACCAT
TTGGTGAATTCTTGGTACTTTATTTTTTGTATATCTCCTGCAACTTCAGT
TCATATGTCCTCATAGTTTCCTTTCTGTGTAAATGTATTAAACATTTTGT
AAAATGAATGATATAGGCATTCAGGAAGCCATTACTCTTTTGGATATGAT
GTAAAGCCATCGCTTAGTCTCTTTACCTCAACGTTCTTACTATACACAAA
AGAATTCCAAATCCTCTATTTAAAATACCAAATGTCTTTGTATTGCATCG
ACTGCTCCACATGGCTAACCACGTTCCCATCATGCTATCTTCCGCTTTTT
CTCCAGGTCTCTTTTCCTATGCTGCTGCTTTACTTTACTCCCCTTTTCCT
CCTGCGTCTCGATGTCTTTCGCCTCCCTCTTTTCCCATCCGTTCTTGTCC
TACCTTTCCCCATCCTCCCGTATATACCTCTTTCTTTCCCCCCG

GGGACGATGATATGGGTAGCCTGGGGGCGCCTGTTTCCAACATGAGGTGA
ACTATAGAAGTTTCGCGAAATCAGGAGATTCTCAATAAAGACAGAAATGG
CCAGGAGTACAAAAAACCTGCCTTTAATGTGATCCTGGAGAAAGGCTGGG
TTTGCTGGGGACATGCTGAAATCACATACATCTCCATTTAAAAACTGCGG
CTTTTGCTTTAGATGTGATTATTTCCCACTGTGGCCATAAATTAGGGGCA
GTGACTATTAGATTTAATTACTTTCTATGGCTGCATGCAGCTGGGGAAAT
GGCAGCTCTCAGAAAAGGTTATTACAAAGGACCCCTCCACACAAAGATCA
TCCCCAGTGCATACCCTTCACAAGACGCAAGCATGGAGCCACAGAAGATA
CACAAGCTTTTTGGCTGAAAGTGACATGGACCGAATGCACAGAGCACAGA
GACATGGCTGCTGGTTAGGAATTCTGTGCTTTCTTTGTGGAAATACACTT
TGTGCTCCACTCCACAGCGACTGTCATTTGATATCTAATGAGCTAGAAAA
CAAACGGCCGGATTTCTCCCAGTTATACCACCACATAACAAATGTCCTTG
ACTCAGAACACACTGTTCTCTCAGCTCTTAAGTTGCTAGAAGCTTGTAGG
GATTCATACACATGACCATAGACCATATTAATAATATGCTTGGAGCAATG
AGGCTCCCTTTGCCCATATATTATGCCAATGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_c08.b1 MSMg01no450_c08.b1 CHROMAT_FILE:
MSMg01no450_c08.b1 PHD_FILE: MSMg01no450_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:58 2005
         (124 letters)



>mm_chr3_38807997_38808520
          Length = 524

 Score =  217 bits (112), Expect = 2e-61
 Identities = 121/124 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcaactccaattattactatggaatttcacaagttcatagactaatcactagagtcac 60
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 324 tatcaactccaattattactatggaattttagaagttcatagactaatcactagagtcac 265

                                                                       
Query: 61  tttacacgctcttaaaatgtatttcgtataattacttagtgtaatactgatacaatcctt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 tttacacgctcttaaaatgtatttcgtagaattacttagtgtaatactgatacaatcctt 205

               
Query: 121 aaaa 124
           ||||
Sbjct: 204 aaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no450_c08.g1 MSMg01no450_c08.g1 CHROMAT_FILE:
MSMg01no450_c08.g1 PHD_FILE: MSMg01no450_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:58 2005
         (518 letters)



>mm_chr3_38653166_38654083
          Length = 918

 Score =  994 bits (514), Expect = 0.0
 Identities = 517/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagattctcaataaagacagaaatggccaggagtacaaaaaacctgcctttaatgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagattctcaataaagacagaaatggccaggagtacaaaaaacctgcctttaatgtga 260

                                                                       
Query: 61  tcctggagaaaggctgggtttgctggggacatgctgaaatcacatacatctccatttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctggagaaaggctgggtttgctggggacatgctgaaatcacatacatctccatttaaa 320

                                                                       
Query: 121 aactgcggcttttgctttagatgtgattatttcccactgtggccataaattaggggcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgcggcttttgctttagatgtgattatttcccactgtggccataaattaggggcagt 380

                                                                       
Query: 181 gactattagatttaattactttctatggctgcatgcagctggggaaatggcagctctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactattagatttaattactttctatggctgcatgcagctggggaaatggcagctctcag 440

                                                                       
Query: 241 aaaaggttattacaaaggacccctccacacaaagatcatccccagtgcatacccttcaca 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaggtgattacaaaggacccctccacacaaagatcatccccagtgcatacccttcaca 500

                                                                       
Query: 301 agacgcaagcatggagccacagaagatacacaagctttttggctgaaagtgacatggacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacgcaagcatggagccacagaagatacacaagctttttggctgaaagtgacatggacc 560

                                                                       
Query: 361 gaatgcacagagcacagagacatggctgctggttaggaattctgtgctttctttgtggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatgcacagagcacagagacatggctgctggttaggaattctgtgctttctttgtggaa 620

                                                                       
Query: 421 atacactttgtgctccactccacagcgactgtcatttgatatctaatgagctagaaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atacactttgtgctccactccacagcgactgtcatttgatatctaatgagctagaaaaca 680

                                                 
Query: 481 aacggccggatttctcccagttataccaccacataaca 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacggccggatttctcccagttataccaccacataaca 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |