BAC Information

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BAC

Clone NameMSMg01-450F20
Chromosome3 (Build37)
Map Location 47,016,185 - 47,016,472
singlet/doubletsinglet
Overlap genenone
Upstream geneEG241989, LOC545517, LOC383849
Downstream geneLOC383850, LOC100039426, LOC666202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450F20.T7 (MSMg01no450_f20.b1)MSMg01-450F20.TJ (MSMg01no450_f20.g1)
ACCAG538112AG538113
length750795
length of high quality
(start - end)
471 (74 - 544)307 (123 - 429)
definitionCHROMAT_FILE: MSMg01no450_f20.b1 PHD_FILE: MSMg01no450_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:15 2005CHROMAT_FILE: MSMg01no450_f20.g1 PHD_FILE: MSMg01no450_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTAACTGCCGGGTTGAGCAGGTTAAAAGATAATGAGAAT
CAGTGTGGAGTTACAGAGACAAAATTTGGAGCTGTGACGAAAGGATGGAC
CATCTAGTGATTGCCATATGCAGGGATCCATCCCATAATCAGCTTCCAAA
TGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGAT
ATAGCTGTCTCTTGTGAGACTATGTCGGGGCCTAGCAAACACAGAAGTGG
AAAATCACAGTCAGCTATTGGATGTTTCACACGGCCCCCAATGGAGGAGC
TAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAA
AAACAATATGAACTAACCAGTACTCGAGAGCTCTTGTCTTTAGCTGCATA
TGTATCAAAAGATGGCCTAACGTGCAGTGGTTCTTAGGCTTGAGCCAGAA
CCAGGCAGAATGTCCAGCAGAGTGTCCTATTGTCCTTCCAGCAGAGTGTC
CTATTGCCCCTGCCTCTCAGGCAGGAGAGTCCTCAGTTACGTAACTATGT
TGTCATCCTTCCCATGAAGCAGAAAGTCTGTGTTTTCGACCCTCCTGATG
TGCTATGAAACCGGTTTGCTAACTCCCAAGGTTACATTAAACTTCTCGAA
AACTTTTTTTCCCCGTTTTTAGTAAAAAAACCCTCCTGTTCATGCCCGAG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGCATGTACTTTTGAATCCTTCACTTT
GCCTTCTCCCCATGTCTGTCACTCTGTTTTTCCTTGTCTGATAAGAACAT
CAGCCATGTTGAATTAGAACTAATTCTAATTACCTCATTTTAACTTGATT
CTCTCTGTAAACACTTTATTACCTAATAAAGACAAATGTGGAGATAATGA
AGGATTAATCCTAAATACAAACCTTACTTAAGTACATAACTAACTAGTAT
ACTGAATATATGATATATAACATAAATGAGTATGTTTATATTATAGTCAA
ATATGTTTTGTTATTTTAAATATATGTGAGTGTGTATCTTTTTGAGTGTA
TGTGTAGTATATCTATGTGTAGAGTAGGTATGNATGTNATTTTNTTTTTT
TTTTTTTTATATTATTTTTGTATTTGTTATGTTTATATTATTTATGATTT
TTTTTTTTTTTGTTATTTATATTTTTAAATTGTTAGTATTAGTTATTCTG
AAATTTTCTTTATTTTTTCTTTTATTTATTTTTGTTTTTTTTCTTTTTTT
TTTTTTTTTTTTCCTTTTTTTCTTTTTTCTTTACATCTTTTTTCTTATTT
CACTCCTATTCTCTTCCGTTCTCTTTTCTCCTTATTTCCTTCCCTCCTCA
TTTTCTCTTTATTGTCTTACTCCTCTATCCTCCTTACACTTTTTATTCCA
TCTACCTTATTCTTACACTATCCTCCTTCCATTCTTTTCAACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_f20.g1 MSMg01no450_f20.g1 CHROMAT_FILE:
MSMg01no450_f20.g1 PHD_FILE: MSMg01no450_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:16 2005
         (307 letters)



>mm_chr3_47015910_47016616
          Length = 707

 Score =  501 bits (259), Expect = e-146
 Identities = 286/307 (93%), Gaps = 19/307 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtttttccttgtctgataagaacatcagccatgttgaattagaactaattctaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctgtttttccttgtctgataagaacatcagccatgttgaattagaactaattctaatta 504

                                                                       
Query: 61  cctcattttaacttgattctctctgtaaacactttattacctaataaagacaaatgtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctcattttaacttgattctctctgtaaacactttattacctaataaagacaaatgtgga 444

                                                                       
Query: 121 gataatgaaggattaatcctaaatacaaaccttacttaagtacataactaactagtatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gataatgaaggattaatcctaaatacaaaccttacttaagtacataactaactagtatac 384

                                                                       
Query: 181 tgaatatatgatatataacataaatgagtatgtttatattatagtcaaatatgttttgtt 240
           | ||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 383 ttaatatatgatatataacataaatgagtatgtttatattatagtc-------------- 338

                                                                       
Query: 241 attttaaatatatgtgagtgtgtatctttttgagtgtatgtgtagtatatctatgtgtag 300
                ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 337 -----aaatatatgtgagtgtgtatctttttgagtgtatgtgtagtatatgtatgtgtag 283

                  
Query: 301 agtaggt 307
           |||||||
Sbjct: 282 agtaggt 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)