Query= MSMg01no450_h08.b1 MSMg01no450_h08.b1 CHROMAT_FILE:
MSMg01no450_h08.b1 PHD_FILE: MSMg01no450_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:23 2005
(370 letters)
>mm_chr3_116485491_116486256
Length = 766
Score = 625 bits (323), Expect = 0.0
Identities = 341/349 (97%), Gaps = 5/349 (1%)
Strand = Plus / Plus
Query: 22 agagaccagcacccgtggagggccagagcgtgtacagagaacatcaggggaaaggaacag 81
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 agagaccagcacgcgtggagggccagagcgtgtacagagaacatcaggggaaaggaacag 281
Query: 82 tagattttgaagacataggagggaagaaaacaggaaaaaggaaagttagtgtcatcacaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tagattttgaagacataggagggaagaaaacaggaaaaaggaaagttagtgtcatcacaa 341
Query: 142 atacagccagtaatgctgaaattctgccagtcttctggagttttatttgttttcagggct 201
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atacagccagtaatgctgcaattctgccagtcttctggagttttatttgttttcagggct 401
Query: 202 ctaataagactactgatctcccggtggctaattgagtcagcatatagatatatatactga 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctaataagactactgatctcccggtggctaattgagtcagcatatagatatatatactga 461
Query: 262 tgaattaattagtaaagtttaggctaaacttgatctgcagatgacaacaaatgccagtac 321
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 462 tgaatta----gtaaagtttaggctaaacttgatctgcggatgacaacaaatgccagtac 517
Query: 322 cttcccatttctggtgtgtgtgtggtgtgtgtgtgtgagtgtgtgtctg 370
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 518 cttcccatttctg-tgtgtgtgtggtgtgtgtgtgtgagtgtgtgtctg 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 766
Length adjustment: 9
Effective length of query: 361
Effective length of database: 757
Effective search space: 273277
Effective search space used: 273277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_h08.g1 MSMg01no450_h08.g1 CHROMAT_FILE:
MSMg01no450_h08.g1 PHD_FILE: MSMg01no450_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:23 2005
(573 letters)
>mm_chr3_116630981_116631953
Length = 973
Score = 1067 bits (552), Expect = 0.0
Identities = 566/573 (98%), Gaps = 5/573 (0%)
Strand = Plus / Minus
Query: 1 actctgtagaccaggctggcctcaaactcacttccctccctgattttcaaaccacattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 actctgtagaccaggctggcctcaaactcacttccctccctgattttcaaaccacattgt 535
Query: 61 ttgtacctcaggctagcctcaaagcctcaggctccctgcctcagcctccagagctctatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttgtacctcaggctagcctcaaagcctcaggctccctgcctcagcctccagagctctatc 475
Query: 121 atcaagcctgtgcagccaccttcagcctaaggagcctcttaatggaataagttattctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atcaagcctgtgcagccaccttcagcctaaggagcctcttaatggaataagttattctgg 415
Query: 181 tttgtgtggaagcaaccgtaaccattgcaacaaagataatgaggccaaagccgaaagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tttgtgtggaagcaaccgtaaccattgcaacaaagataatgaggccaaagccgaaagctt 355
Query: 241 cactaacatactagttagctttctcatccctgtgacaaatgtgcaactcaaaacaggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cactaacatactagttagctttctcatccctgtgacaaatgtgcaactcaaaacaggaag 295
Query: 301 gatttattgggacccacggcttgaggagatgcaataggtaaagccagggagggcacagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gatttattgggacccacggcttgaggagatgcaataggtaaagccagggagggcacagaa 235
Query: 361 acaggagccgcatgcagcagctgatcacacagaagacagagagggggaaagaggaagaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 acaggagccgcatgcagcagctgatcacacagaagacagagagggggaaagaggaagaga 175
Query: 421 gggaaggggggagaaagagggacagagacagacagacaaacacacagagaaagattgagg 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gggaa-gggggagaaagagggacagagacagacagacaaacacacagagaaagattgagg 116
Query: 481 gggaagagagagaagaanagagaggaagtgagagagcgagaaagagaaagcaaggga--- 537
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gggaagagagagaagaaaagagaggaagtgagagagcgagaaagagaaagcaagggagag 56
Query: 538 -gagatatagagaaagccagagagagagagaga 569
|||||||||||||||| |||||||||||||||
Sbjct: 55 tgagatatagagaaagcaagagagagagagaga 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
