BAC Information

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BAC

Clone NameMSMg01-450I22
Chromosome3 (Build37)
Map Location 51,378,254 - 51,593,884
singlet/doubletdoublet
Overlap geneMgst2, Maml3
Upstream geneEG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450I22.T7 (MSMg01no450_i22.b1)MSMg01-450I22.TJ (MSMg01no450_i22.g1)
ACCAG538257AG538258
length818798
length of high quality
(start - end)
183 (72 - 254)248 (76 - 323)
definitionCHROMAT_FILE: MSMg01no450_i22.b1 PHD_FILE: MSMg01no450_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:31 2005CHROMAT_FILE: MSMg01no450_i22.g1 PHD_FILE: MSMg01no450_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,378,254 - 51,378,436)(51,593,637 - 51,593,884)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAATCCGCGGAA
TTCTCCAAGTTGACCAACTCGACAGACAGCTTTAAAAAGAACGGCTCAGG
TGTGAGGGTTGTACCTCAGCCGAGGCTCTCTCTGGCTTTGATTTGTAGCC
CACAAACTAGGAGTGGTGGCCACACACCTGTGATCCCAGTATTGGACAGA
TGGACGGCCACAAGTCCAAACTTACTCTTCTTTACACAGTATGTTTAAAG
CCAGCGTGCGATGCAGGAGCCCTGTCCTACATAACAATAAACAACAGCAA
AATAATAGTAACAATTACAGTTTTAGTTTGTTTTCATCAACATTGTTTGC
TACAAGGTAATTCTGAGTGCTCGGCTTTTTTGTTTGCTTGGTCCTTCTTT
ACACAACCCTTTCCCCCCTTTTTTTTTCTTATTCTTTTTTTCCCCTTCCT
CTCTTCCCCCTTCCTCTTTCCCCTTTCCCCTTCTTCTCTTTCCCCTTCCT
TCCTCCCTTCTCTTCCTCCCCTTCCCTCTTTCTCTCTTCTCCTTTTATTT
TCTTCCCTTTATTCCCTCCCCTTTCCTCTTTTTTTTTTCTTTTCCTTCCT
CTTCTCCTCCTTATCCTTTCTTTCCTTTTCCTTTCCTTTTCTCCTTTCTC
TCTCCTCTCCTTCCTTTTTCCTTCCTTCCTTTTCCCTCTTTTCCCCTTTT
TCCTCCTTCCCTCTCCCTCTTTTCTTTCGCCCTCTCCTCCTTCCCCCCCC
TCCCTCCCTTTTTCCTTTCTCCCTTCCCCTCTCCTCCCCTTTTTTTCCTC
TTTTTCTCTTCCCCTCCG
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTACAATAGACACCGCGCCCTGGA
GGCCTACAGTAAGGGCCTTGCTGATATTGGAAAATGGACCTTGAAGGAGA
GGGATGTATTGGTTGGAGCCTAGGTTCCTGACTTTTAAAATCAGAGTGAC
ATTGATGCCCATAGGCCCTGAGAGAATAGACTGTCAGAGGAACGTCATGG
CTGGGGTCTGCCCTAGAGGGATCCTGCAATATCATACACTTGCAAGGAAC
TAGAAAGAGGGAGACCCGCCCAGTATTTTCTTGGCTACAGAGGGACCACC
TCAACCCTTCCTAGGTAAGAGCGTTAGCGTCTGGGACGACAAAGTAGTTG
AGCGTCCCCCTGTCATTGCCCCTGCTTATATCCCCGCTCTGGTTACAGTT
ATAGCTTACTCTAACATAAACTTGGCCTTTTCCTCATTTTCAGCCTTTTT
CAAACCCCGCAGATTCGTCTCCTTTTCTCCGTATTCTACTTGTCCCTTCT
CATAGCTCCTATCTTTTTCTCCTTTATGCCTCCCACGTATCTTTCCGCCT
GTACTGCTTTCTCACCTTCTGTTTTTCCCGCGTCTTTCACAACGCACTTC
GTCCTGTCTTTTCCCCCTGTTCCATGTTCTTTTTTTTATTCACTCCAATT
CCCCCCCTCCCCTTTTTTCTCCTCTTCCCCCCTCGTTCCTTAACTCCTTC
CTTCTCTTTCCCTCCTTCCCCTTCTTTCCCTTTACCCTCCATTTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_i22.b1 MSMg01no450_i22.b1 CHROMAT_FILE:
MSMg01no450_i22.b1 PHD_FILE: MSMg01no450_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:31 2005
         (183 letters)



>mm_chr3_51378054_51378636
          Length = 583

 Score =  339 bits (175), Expect = 9e-98
 Identities = 181/183 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagacagctttaaaaagaacggctcaggtgtgagggttgtacctcagccgaggctctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagacagctttaaaaagaacggctcaggtgtgagggttgtacctcagccgaggctctct 260

                                                                       
Query: 61  ctggctttgatttgtagcccacaaactaggagtggtggccacacacctgtgatcccagta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ctggctttgatttgtagcccacaaactaggagtggtggccacacacctgtgatcccagca 320

                                                                       
Query: 121 ttggacagatggacggccacaagtccaaacttactcttctttacacagtatgtttaaagc 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggacagatggacggtcacaagtccaaacttactcttctttacacagtatgtttaaagc 380

              
Query: 181 cag 183
           |||
Sbjct: 381 cag 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no450_i22.g1 MSMg01no450_i22.g1 CHROMAT_FILE:
MSMg01no450_i22.g1 PHD_FILE: MSMg01no450_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:32 2005
         (248 letters)



>mm_chr3_51593437_51594084
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtacaatagacaccgcgccctggaggcctacagtaagggccttgctgatattggaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agtacaatagacaccgcgccctggaggcctacagtaagggccttgctgatattggaaaat 389

                                                                       
Query: 61  ggaccttgaaggagagggatgtattggttggagcctaggttcctgacttttaaaatcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggaccttgaaggagagggatgtattggttggagcctaggttcctgacttttaaaatcaga 329

                                                                       
Query: 121 gtgacattgatgcccataggccctgagagaatagactgtcagaggaacgtcatggctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgacattgatgcccataggccctgagagaatagactgtcagaggaacgtcatggctggg 269

                                                                       
Query: 181 gtctgccctagagggatcctgcaatatcatacacttgcaaggaactagaaagagggagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtctgccctagagggatcctgcaatatcatacacttgcaaggaactagaaagagggagac 209

                   
Query: 241 ccgcccag 248
           ||||||||
Sbjct: 208 ccgcccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)