BAC Information

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BAC

Clone NameMSMg01-450K16
Chromosome3 (Build37)
Map Location 23,939,892 - 23,940,229
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC623751, LOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450K16.T7 (MSMg01no450_k16.b1)MSMg01-450K16.TJ (MSMg01no450_k16.g1)
ACCAG538341AG538342
length747754
length of high quality
(start - end)
297 (326 - 622)338 (328 - 665)
definitionCHROMAT_FILE: MSMg01no450_k16.b1 PHD_FILE: MSMg01no450_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:40 2005CHROMAT_FILE: MSMg01no450_k16.g1 PHD_FILE: MSMg01no450_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATATAAXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGGATCCGCG
GAATTCATTGTTTTCCTGGAAAATTTCCTGAATACCTATGGCTCAGGCTC
TAAGATCAATTATTGATAAATGGGATCTTTTGGAACTGAAAAGCTTCTGT
AAATAAATGGATACTGATAATAGGACAAAATAGCAATCTACAGATTAGGA
AATTTTCTTCCCTAATCCTACATCCAGTATAAGGCTAATCAATATCCAAA
ATGTATAAAGAACACAAGAAGTTAGACTCTGAAATACTAAATAACCCAAT
TTAAAAAATGGGATACAGATATTAACAGAAAAATCTCAACAGAGGAATCT
TGAATGTCCAAGAAGCTCTTAAAGACATGTTTAATTTACTTAGACATCAG
GAAAATACAAATCACAACCACACTGAGATTTCAGCTTACATCCAGCAGAA
TGACTACAATCATAAACTTAAGTGGCTGTACACACTGGTGAGGATGTAGA
GAAAAAGGAACACTCCTCCATAGCTGGTGCCATTGCAAACTTGCATAACC
ACTGTGGAAATCATGCTGGTGGTTCCTCAGAAAATTAGAAATAGTTTTAC
CTGAAGACCCAGTTATACGGCTCTTGGGTATATACCCAAAAGATACTCCA
TAATATTACAAAATCCTGTCCTCCACTATGTTCATAGCAGCCTTTTTTTT
TTTTTTAAGCCTGAATCTGTAGGTTACCCTAATGTCCTTCCCCCGAN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCCTTTAAAACATTCTTCCCAAATAC
AGTGTCTCATTATCTGAGGAGTTTTCATTTTAAGACATCTGTTTTATTCT
AAGCTTAATATTTTGAAAAAGTTTGAAATATATCCTTAAAGTTATGATTT
GCTTAAGTAAGCAGCTTAAATCCTTAAAGTTGCTAGGTTAAATCTTTAAA
TGACTGACAAAGCCAGCATCCAGTTGGTTAAATAGATTTGTGAACCATCA
TTTAGGGGAAAGCAGATTCTTTTTTAAGATAGCCATTTTAAGCAAAGTTC
AGCCATTTTCAAAAGGACGAATGACATACGTTTTCTCTCACTTGTTTCAA
GGTTTTATGGAGATGCATAAAATAATGTATATCGATATGACATGACAATA
GAAGCTAAATTGTCTAGGAACAACATGGACAAATTGGAGAGGAAAGTAAT
AAAAGAGAGGATAATGGGAAAATGTAGTGTCTAGATGAAATAAAAAAAAT
CCATATGTAAAGAAAACTATATCATGTAAAATGAATATATACACCCTAAA
TATATACATTTATAATGTATAAATTTATCTTTAANATATAATCTTATCTT
TAAAAAAATAAACCCTCATCAACCAACTCAAGTCTCCGAATTTTAGAGAA
TCAAATCTTTGGCTGCAAAGACTGCAGCTGCATCTGAAGGGCTTAATTTC
AGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_k16.g1 MSMg01no450_k16.g1 CHROMAT_FILE:
MSMg01no450_k16.g1 PHD_FILE: MSMg01no450_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:40 2005
         (338 letters)



>mm_chr3_23939692_23940430
          Length = 739

 Score =  603 bits (312), Expect = e-177
 Identities = 332/339 (97%), Gaps = 2/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatagccattttaagcaaagttcagccattttcaaaaggacgaatgacatacgttttctc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatagccattttaatcaaagttcagccattttcaaaaggacgaatgacatacgttttctc 260

                                                                       
Query: 61  tcacttgtttcaaggttttatggagatgcataaaataatgtatatcgatatgacatgaca 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tcacttgtttcaaggttttatggagatgcataaaataatatatatcgatatgacatgaca 320

                                                                       
Query: 121 atagaagctaaattgtctaggaacaacatggacaaattggagaggaaagtaataaaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaagctaaattgtctaggaacaacatggacaaattggagaggaaagtaataaaagag 380

                                                                       
Query: 181 aggataatgggaaaatgtagtgtctagatgaaataaaaaaaa-tccatatgtaaagaaaa 239
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 381 aggataatgggaaaatgtagtgtctagatgaaataaaaaaaaattcatatgtaaagaaaa 440

                                                                       
Query: 240 ctatatcatgtaaaatgaatatatacaccctaaatatatacatttataatgtataaattt 299
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctataccatgtaaaatgaatatatacaccctaaatatatacatttataatgtataaattt 500

                                                  
Query: 300 atctttaanatataatcttatctttaaaaaaataaaccc 338
           |||||||| |||||||||||||||||||||| |||||||
Sbjct: 501 atctttaaaatataatcttatctttaaaaaa-taaaccc 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 739
Length adjustment: 9
Effective length of query: 329
Effective length of database: 730
Effective search space:   240170
Effective search space used:   240170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)