NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATGCGCGG
AATTCCACATCTATTTTCTGAATACAAAATGAGACCACTACTATAATGAG
TGTTAAATTGTTGCATCTGGTTAAAAAATATCCCGAAGTTACTCAATAGG
CTTTATCTGCAAGCCTTTCAGATGCATTCTTTGTTTCCATAAAATGTTTA
TTCTATCATATTTTCATCTCCTTTTAAATTCTCATGAAAAGGTCTTGGAA
AAGAGTTGCTAAAAATTACATTTAAGAATGGAGCATCTCTTTGATTTACC
AAATTTATATTCATATAGGCATACTTTTTTTAAGTCGAGAATGACAACAG
CTTATTGCTTTGGCCGTTTTTCCCCTATGCTTCATGGGACAGTCCTATTG
TCTCCATACTAATATTCAAACGCAAAGAAATGAGAAGATCTTCTATAAAA
ATAATAATCACAGCTTTCATTCCTGTATCTATAGTCTGTTATATTGCCAT
ATGCACTCCACGAGAAGAGCACGAACAAGCTAGCAGTCTTACTCTGCATG
TGCCTAACTCTTCACATACCTCATTTACCCTTGTTCACCACCTATTCTCA
TGGCTGCCAGTATTTTTCCTTTTTGATAATGTCTTTATTAATGTCACTCC
AATACTCAATAAACTTTTTGTGCTCCGTCGCTTGTCCGCGCCTTTTTCCT
TTCTTCCTTTTTTCTTTCCTTTTCTCTTTATCACTCTTCTCTCCTTTCTC
TCTATTTCTTTATTTGACCCTACTATCTCTTTTCCTCCN

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTCTATTAGGACATCTGTGAGC
AAAACTAGCTCAGTTTGCATGACGTCATGCAAGTTAAGATTTTATTGGGG
ATTTTTGTTCCTGTTTTTGACACAAAAGGATCAGTCACATAGTTCTATAA
TAGGTGAAAGAATAGTAAGGTCTCAAGTTAATAACTGGGACCTACTTGGG
AGGATATGAATTTGCTGGAACACACATAGGCATCCTGTTTCAAATATAAT
ATAAACAAACAAAAGAGGCACTGAAAATATTTCAGGGACTTGAAGAAATG
AAATAGATAATACTAACTTTCAATACTTAATCTTTGTTTACTGTGTATAC
TGTATCCTCTTTGCATACCTAAGAGGAATTCTGATTTTCAGAGGTGACAT
TGGGTGTAGTATGGGTAGTCAGATCCCATGACAATTGGACATTAGAACCT
ATAGCAGAGTCCTAGTCCTAGCTAGCAGCTACACACTAGTAAGATCTGAA
AATCAGTTGGGCAAACACTAAACTCTGCATCTCCGTGTCTGATGTTAAAG
CTCTCTTCAGATCTCCAACTCCTTTCAGCTTTGTTGACTTACACATACTT
CTTTCTCTTGGGCGATCTCCACTTCCCGTTAACAGCTTTTCATGTTCTGG
GTCCTGCACTACTGCCATCCCCTATTCCCTTGGGATCTCCTAGGCTTATC
CTGCCTTTATT

Query= MSMg01no450_k23.b1 MSMg01no450_k23.b1 CHROMAT_FILE:
MSMg01no450_k23.b1 PHD_FILE: MSMg01no450_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:42 2005
         (246 letters)



>mm_chr3_63414615_63415260
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgagaccactactataatgagtgttaaattgttgcatctggttaaaaaatatcccga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgagaccactactataatgagtgttaaattgttgcatctggttaaaaaatatcccga 260

                                                                       
Query: 61  agttactcaataggctttatctgcaagcctttcagatgcattctttgtttccataaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttactcaataggctttatctgcaagcctttcagatgcattctttgtttccataaaatg 320

                                                                       
Query: 121 tttattctatcatattttcatctccttttaaattctcatgaaaaggtcttggaaaagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattctatcatattttcatctccttttaaattctcatgaaaaggtcttggaaaagagt 380

                                                                       
Query: 181 tgctaaaaattacatttaagaatggagcatctctttgatttaccaaatttatattcatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctaaaaattacatttaagaatggagcatctctttgatttaccaaatttatattcatat 440

                 
Query: 241 aggcat 246
           ||||||
Sbjct: 441 aggcat 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no450_k23.g1 MSMg01no450_k23.g1 CHROMAT_FILE:
MSMg01no450_k23.g1 PHD_FILE: MSMg01no450_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:42 2005
         (515 letters)



>mm_chr3_63603091_63604005
          Length = 915

 Score =  965 bits (499), Expect = 0.0
 Identities = 511/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctattaggacatctgtgagcaaaactagctcagtttgcatgacgtcatgcaagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cactctattaggacatctgtgagcaaaactagctcagtttgcatgacgtcatgcaagtta 601

                                                                       
Query: 61  agattttattggggatttttgttcctgtttttgacacaaaaggatcagtcacatagttct 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agattttattggggacttttgttcctgtttttgacacaaaaggatcagtcacatagttct 541

                                                                       
Query: 121 ataataggtgaaagaatagtaaggtctcaagttaataactgggacctacttgggaggata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ataataggtgaaagaatagtaaggtctcaagttaataactgggacctacttgggaggata 481

                                                                       
Query: 181 tgaatttgctggaacacacataggcatcctgtttcaaatataatataaacaaacaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgaatttgctggaacacacataggcatcctgtttcaaatataatataaacaaacaaaaga 421

                                                                       
Query: 241 ggcactgaaaatatttcagggacttgaagaaatgaaatagataatactaactttcaatac 300
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggcactgaaaagagttcagggacttgaagaaatgaaatagataatactaactttcaatac 361

                                                                       
Query: 301 ttaatctttgtttactgtgtatactgtatcctctttgcatacctaagaggaattctgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttaatctttgtttactgtgtatactgtatcctctttgcatacctaagaggaattctgatt 301

                                                                       
Query: 361 ttcagaggtgacattgggtgtagtatgggtagtcagatcccatgacaattggacattaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttcagaggtgacattgggtgtagtatgggtagtcagatcccatgacaattggacattaga 241

                                                                       
Query: 421 acctatagcagagtcctagtcctagctagcagctacacactagtaagatctgaaaatcag 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 240 acctatagcagagtcctagtcctagctagcagctacacacaagtaagatctgaaaatcag 181

                                              
Query: 481 ttgggcaaacactaaactctgcatctccgtgtctg 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 180 ttgggcaaacactaaactctgcatctccgtgtctg 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)