BAC Information

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BAC

Clone NameMSMg01-450L10
Chromosome3 (Build37)
Map Location 106,950,027 - 106,950,185
singlet/doubletsinglet
Overlap genenone
Upstream geneChi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2
Downstream geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450L10.T7 (MSMg01no450_l10.b1)MSMg01-450L10.TJ (MSMg01no450_l10.g1)
ACCAG538377AG538378
length753764
length of high quality
(start - end)
239 (75 - 313)162 (147 - 308)
definitionCHROMAT_FILE: MSMg01no450_l10.b1 PHD_FILE: MSMg01no450_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:44 2005CHROMAT_FILE: MSMg01no450_l10.g1 PHD_FILE: MSMg01no450_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAAAGAGGAGCCG
CGGAATTCTTTTTAACAGAGATTTGTTTATGTTACGTATGTTATGTATAT
GAGTACACTGGGGCTGACACCACAGAAGATCCCATTATAGGTGGTTGTGA
TCCCCTAGTTGGTTGTGCGCCACTAGGTGGTTGCTGAGAATTGAACTCAG
GACCTTTGGAAAAGCAGTCAGTGCTCTTAACTACTGAGCCATCTCTCCAG
TCCAGTGAGGAATTCTTTACGTGGTCTTACTTAATAGACAGTTTTGAAGT
TCAGAAAGAGTCCTTATTGTTTTAGTCTTTTGAAAATAATTGCTGCTTCA
AATGGAAGGGTAAATTCAGACCGGTTCCTATTGGCTTATCTTTTCAACAT
ATAAGGCAGCAGAAAATAAAGTAGCGATTACTGTTTATGAAGGATATTTT
GCTTGCAAAGTTTATTTTCATCTTATCCTCATACTATAATCCATAGGTAG
GCACGCATGCCGGCATGCTTGTTTTGGTATCCTCATTTTGCAGAGTAGAT
AGTTGGGGCTCACACATGCTTGAACTATCTTATGAGATCCTATGGTAGTT
TTTAGTATAGTTGATATTTACTACCCGTTCCTGTTTGTCCCCGCGTTCTT
TCTCTCTCCTCCTCTTTGCTCTCTCATTTTTTCTTACCCTTCCTGCTTGT
CGGTTCTTTTCTGTTCTGCGCTTTTTTCTTTTCTGCCTTTTCTCCTTTCC
CTT
CCTACTATGATCAGGGAAGNAAGGAGGAGGCTGGTTCCAAACAGGAGGNN
GAACANAGAAGTAACAAAACAAGCGTTGCAANCNTAGACTAGGAAGGAAC
ATTTCCATATGAAGTATATTACTCTAAGCCATAAAGAATATGTTGACAAA
TTTCAGCCAAATCATTACAAATTCAAAATTCCCTATAGCCAAATAATTTT
AAATGAAAGGATATGAGAAAATATCTGGATTTTTTTTCTTTGCATTCTTG
TATTATATGAAATCCTTAATGATGAATCTGATTAACATTCAGTAATAAAC
ACACAGGCGGAGAAAGTTTTTTTTTCAGCCTCCTGCAAACACCATCAACT
AGGGCTTTGTTCAGATTCGGGTCAGGCTGGAATTCCAGAAAAGCGTATTA
CAGGTCATCAAATGTGTCAGTGTGTATCCCCCAGGATCCTGTACAGCACT
CCTCGAGGACTGCCTTCTGTAGCTAACAAGCCCGATCAGATATGAAGTTT
ACATACCAACTGCAGATAATATTTATAACGTGTATATAAAGCCAAAGGAT
TATTTCGACAGGTCTTACCTATTATTTTTAAATGCATTTTAATAGACCTA
CCACTTCACTATACATTCACAAAATTTTCACGTAACCATCCTTTACAATG
TCCTCTTTAACCGACTCTTCTTCTGGGCTCTGATAACGCCACTTTAAACA
CTCCTCCTTTCTTCCTCTTGCACTCTCCTTAACTACCTTGTTTCATTATT
TTGCTCTACAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_l10.g1 MSMg01no450_l10.g1 CHROMAT_FILE:
MSMg01no450_l10.g1 PHD_FILE: MSMg01no450_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:44 2005
         (162 letters)



>mm_chr3_106949827_106950387
          Length = 561

 Score =  271 bits (140), Expect = 2e-77
 Identities = 155/160 (96%), Gaps = 1/160 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatttcagccaaatcattacaaattcaaaattccctatagccaaataattttaaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatttcagccaaatcattacaaattcaaaattccctatagccaaataattttaaatga 260

                                                                       
Query: 61  aaggatatgagaaaatatctggattttttttctttgcattcttgtattatatgaaatcct 120
           |||||||||||||||||||||| ||||||| |||||||||||||||  | ||||||||||
Sbjct: 261 aaggatatgagaaaatatctgggttttttt-ctttgcattcttgtagcagatgaaatcct 319

                                                   
Query: 121 taatgatgaatctgattaacattcagtaataaacacacag 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taatgatgaatctgattaacattcagtaataaacacacag 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 561
Length adjustment: 8
Effective length of query: 154
Effective length of database: 553
Effective search space:    85162
Effective search space used:    85162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)