BAC Information

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BAC

Clone NameMSMg01-450M05
Chromosome3 (Build37)
Map Location 23,873,441 - 23,873,867
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC623751, LOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450M05.T7 (MSMg01no450_m05.b1)MSMg01-450M05.TJ (MSMg01no450_m05.g1)
ACCAG538413AG538414
length756769
length of high quality
(start - end)
437 (48 - 484)354 (81 - 434)
definitionCHROMAT_FILE: MSMg01no450_m05.b1 PHD_FILE: MSMg01no450_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:48 2005CHROMAT_FILE: MSMg01no450_m05.g1 PHD_FILE: MSMg01no450_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCG
CGGAATTCTCTAGCTACCAGATCTCATTTCTTGTGCTTGTTAGCATTCTG
TGTTTATTGCCTATGGATTTCCCTTCAAGCAGTCAAAGGCAAAGCAATTA
CTTTACAAACACTGATTTGGTCTTGATCTGGTGTGCCCCCAGTAGAGCTT
TGTAATAACATTCAGCACAAAGTAGAAAGCACCAAAGCCATGTTTCATCT
TTCCATTCTGTTTCATGATAGCTTGTCATATCCCAATACATCTAACTAAA
TATCGAGTATTGTTATTTTATTTTTTTTTCAAAGAAATAGCATAGTGGAT
TCCTGAAGCAGAGTCAGAAAGTCAACTATGGATACCAATAGTAAAGTGTG
GTTTATATTTATGCTGCTTTGTCACATTTACTGTGCTATAGATTCAAAAT
GAATGTTTCCTTCTCTTTTTTAATTGCTTTCTGCATTTCTCTTCTGTAAA
GAACACTACAGATATAAAATGCGGAGAAGTAATAGGCCTCCGGTGACATT
TGAATATCTGATTATTATATACCTTGATACATTCTGCGCTAATGCCTATA
CCCCCATTGCGCCCGCTCCATTCACCCCCGTCTCACATCTGAATGTTCTT
CCCCTTCGTTATTCTCACCTTCTCCTTTTCCACTGTATTCTTCCTTTAGC
CGTCTCTTACTTTCTACGATTCTTCTCTTTATATTTCACCATCCTCTCTT
TCTCCC
GGGGCGATGGTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTCTAGCCTCAGGGGAA
GAAGTCATGTTTAACCCTTGAGAGACTTGAAGCCTCAGGGAACAGGAAAG
CCTGTCAGGTTGGGTGAAGGATGATAGGGTTATCCTAGTGGAGACAGGGG
AAGAAGAATTGGATGAGAAACTGTGGGAGGGCATACCGAAAGGGGTTATT
GACTGGCTTGTAAAAAAATAAAAGAAAAGAAAAAAGCTAGTTAAAATAAA
TGATAGAGTGTTAAGAAAAAAAAAGTTTTGTAATTAAGAACAACATAAGT
TGAGGGCTGGAGAGACAGCTCAGCAGTTAAGAGCATTGGCAGTACTGCCA
AAGGTCCTGAGTTAAATTCCCAACAAATGTGTGCTTATTACCATCCATAA
CATAAAGTGTTGCTCTCTTCTGGTGTGCAAACATACCTGCTGACACAGCT
CTTATGTCTGCTATTTACCATATCTGACTATATGCTATTGTTCCTTACTT
CCGTCTTGCATTACTTCTGTGCTGTGCTCGTGTAACCTCGTCTATCTTGT
TGCTGAGTCTTTGTCCCTGTTCGCTCTTACAATCCTAGTTCACCTCCTCC
CTTTTCTTACTCTTGCCTTGCTCCTTGTTTACTTCTCTCCTCTTTCTATT
TCTCTTTTACTCTTCTTCCTATTCCCTTATCCCCTTCCCTTTCTCTTTTT
TCCTCTCTTTCTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_m05.b1 MSMg01no450_m05.b1 CHROMAT_FILE:
MSMg01no450_m05.b1 PHD_FILE: MSMg01no450_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:48 2005
         (437 letters)



>mm_chr3_23873236_23874072
          Length = 837

 Score =  756 bits (391), Expect = 0.0
 Identities = 418/427 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctctagctaccagatctcatttcttgtgcttgttagcattctgtgtttattgcct 65
           |||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gaattctctagccatcagttctcatttcttgtgcttgttagcattctgtgtttattgcct 573

                                                                       
Query: 66  atggatttcccttcaagcagtcaaaggcaaagcaattactttacaaacactgatttggtc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atggatttcccttcaagcagtcaaaggcaaagcaattactttacaaacactgatttggtc 513

                                                                       
Query: 126 ttgatctggtgtgcccccagtagagctttgtaataacattcagcacaaagtagaaagcac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttgatctggtgtgcccccagtagagctttgtaataacattcagcacaaagtagaaagcac 453

                                                                       
Query: 186 caaagccatgtttcatctttccattctgtttcatgatagcttgtcatatcccaatacatc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caaagccatgtttcatctttccattctgtttcatgatagcttgtcatatcccaatacatc 393

                                                                       
Query: 246 taactaaatatcgagtattgttattttatttttttttcaaagaaatagcatagtggattc 305
           |||||||||||| |||||||||||||||  |  |||||||||||||||||||||||||||
Sbjct: 392 taactaaatatctagtattgttattttaaatacttttcaaagaaatagcatagtggattc 333

                                                                       
Query: 306 ctgaagcagagtcagaaagtcaactatggataccaatagtaaagtgtggtttatatttat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctgaagcagagtcagaaagtcaactatggataccaatagtaaagtgtggtttatatttat 273

                                                                       
Query: 366 gctgctttgtcacatttactgtgctatagattcaaaatgaatgtttccttctctttttta 425
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 272 gctgctttgtcacatttactgtgctatagattcaaaatgaatgtttctttctctttttta 213

                  
Query: 426 attgctt 432
           |||||||
Sbjct: 212 attgctt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)