Query= MSMg01no450_o12.b1 MSMg01no450_o12.b1 CHROMAT_FILE:
MSMg01no450_o12.b1 PHD_FILE: MSMg01no450_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:59 2005
(472 letters)
>mm_chr4_47881718_47882590
Length = 873
Score = 532 bits (275), Expect = e-155
Identities = 296/303 (97%), Gaps = 1/303 (0%)
Strand = Plus / Minus
Query: 171 taattataatatatccagtataagctaactggtatcatttcaacatgttatcaataaaaa 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 taattataatatatccagtataagctaactggtatcatttcaacatgttatcaataaaaa 814
Query: 231 cgtcactgaagagattttttttctttcccccacacaggctttaggatgtgggtttgtttt 290
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 813 cgtcactgaagagatttttaccctttcccccacacaggctttaggatgtgggtttgtttt 754
Query: 291 attcttacagcactgttagaaagcaaaccacatttaagagcacaataggtgtgtgatgct 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 attcttacagcactgttagaaagcaaaccacatttaagagcacaataggtgtgtgatgct 694
Query: 351 acctggttgggcagtgcatgttaggccccgaaggagcaggacagcg-gggtgggaagcca 409
||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct: 693 acctggttgggcagtgcgtcttaggccccgaaggagcaggacagccagggtgggaagcca 634
Query: 410 atagcttctgctttgggaagtaatgactgggagatagtgaagccagtatggctgctgttt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 atagcttctgctttgggaagtaatgactgggagatagtgaagccagtatggctgctgttt 574
Query: 470 cct 472
|||
Sbjct: 573 cct 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space: 398706
Effective search space used: 398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_o12.g1 MSMg01no450_o12.g1 CHROMAT_FILE:
MSMg01no450_o12.g1 PHD_FILE: MSMg01no450_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:59 2005
(510 letters)
>mm_chr3_105075814_105076723
Length = 910
Score = 917 bits (474), Expect = 0.0
Identities = 501/510 (98%)
Strand = Plus / Plus
Query: 1 aggaaagaaatctatgtgaggctcactcagtagggagggcacgttggtgccagagtgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aggaaagaaatctatgtgaggctcactcagtagggagggcacgttggtgccggagtgata 260
Query: 61 ggtccgtgaggagagtgttaagcactcaccagctgatgcccttgttgtctctttgccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtccgtgaggagagtgttaagcactcaccagctgatgcccttgttgtctctttgccctt 320
Query: 121 gcaatggagcaaatgatggtgagaagggattgagcaggaggcggtgctctcatatatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaatggagcaaatgatggtgagaagggattgagcaggaggcggtgctctcatatatttg 380
Query: 181 tacacctaagaacccaacatctattgagctcctctggtatgccggaatgcacgctggacc 240
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 381 tacacctaagaacccaacatctattgagctcctctggtatgccgggatgcatgctggacc 440
Query: 241 atttatttttttagcatggcagctggtgggacaagctctgggtttgctttggagtgggcc 300
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttaatgggttagcatggcagctggtgggacaagctctgggtttgctttggagtgggcc 500
Query: 301 tcaaggagctcctgatttcaggagcagggaaggtgttttagttaattttcttatagctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaggagctcctgatttcaggagcagggaaggtgttttagttaattttcttatagctgt 560
Query: 361 gaccaaatactccacaagaggcaacttcagagaggagggacatcttttgtctcagtttag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaccaaatactccacaagaggcaacttcagagaggagggacatcttttgtctcagtttag 620
Query: 421 gaaggaacatggtacaccacgaaggggagattacggcagtaggagtttgtgaggctggtc 480
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 621 gaaggaacatggtacaccacgaaggggagattatggcagtaggagtttgtgatgctggtc 680
Query: 481 acactgcatgtgcctttagtgaagatggaa 510
||||||||||||||||||||||||||||||
Sbjct: 681 acactgcatgtgcctttagtgaagatggaa 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
