AAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTCCTTTCAACATACAGTAAGTGACACACTGACAAATATGCA
GAGTAAATATGCAGAGTAAATAAAGCTGTCTGGTGTGGTTACTACCCACA
AACCTAAACACCAGCTCTCCAACAGAAAGCTTTAACTATGGAAAACCAGA
GTTGACTATGAGTGCATAGAGTCACTTACCAATATTGTGGTGACAACCAC
AGTTTTGTTTTCAAGCCCAGATGTGTCATTTCCAGAGGGGAGCTCGGTTA
GGGTGACAACCATTTTATCCACTTCACTCCAGTACCCAATCTGAAAAAAG
TGACAGCTGATAAACACAGAGAAATGAACCATCTTAATGTAATAAACTGG
ATACTTTTCGAACCCATGCCTGTATCCAAACTAATACCCTCATTAACCAG
AATCCTAAATAACAGCAAAAAATTTACAGTCATAAACATAATGTAATTAG
GATTGAAACTGTATATATATCATCTTCTAAAGTGGGTTGGATCTTCATTT
TTATTATTTGTTTATTTGGTTTTGTTTATTCAAGGTAAGAACATGGGATG
AATCTATGCTGGTTTGTGTAGAACTCAACATGCATTCAAATCACAATCCT
CCTGCCCCCGGTCTGTCATTCATAGATTAAAGGCATAAGCAAGTACAACT
GGCTCACTTTTTCACATTCCTGGGATATTTACACTGTGGAGTAATG

CCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGTTATATACCCTAAGT
TTTGATTGGATAATTTGGGTTTTTGGTGGTTAGCTTCTTGAGTTCTTTAT
AAATTTTGGATATTAGTCCTGTATCAAATGTGGGATTAGTAAAGATTTTT
TTCCCCAATCTGTATGTAGGTTCTCAAACTGACCATAATGACATCAAAAT
CAACCTAAATATAAAACTATGACCTCTACTGAGAAACACGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTNNNNNNNNN
NTTTTTTTTTTTTTTTTNNNTTNTTTTTTTNNTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNTTNTNTTTTTTTTTTTTTTTNTTTTCTTTTTTNTTTNTTTTTTT
TTTTTTTTTTTTTTTTTCTTNTTTTTTTTTTNTTTNCTTTTTTNTCTTCT
TNTTTTTTTTTTTTTTTTTTTTTTTTCCGTTGTTCCCTTTCCTTTTTCTT
TTTTTCTCTTCTTTCTCTCTTTACTCTCTCTCCTTATTTCTCTTCCTTCC
CTTTCTTT

Query= MSMg01no451_k11.b1 MSMg01no451_k11.b1 CHROMAT_FILE:
MSMg01no451_k11.b1 PHD_FILE: MSMg01no451_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:59 2005
         (658 letters)



>mm_chr3_80512917_80513975
          Length = 1059

 Score = 1230 bits (636), Expect = 0.0
 Identities = 651/658 (98%), Gaps = 5/658 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcc---tttcaacatacagtaagtgacacactgacaaatatgcagagtaaa 60
           ||||||||||||   |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttccaggta--aacatacagtaagtgacacactgacaaatatgcagagtaaa 261

                                                                       
Query: 61  tatgcagagtaaataaagctgtctggtgtggttactacccacaaacctaaacaccagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatgcagagtaaataaagctgtctggtgtggttactacccacaaacctaaacaccagctc 321

                                                                       
Query: 121 tccaacagaaagctttaactatggaaaaccagagttgactatgagtgcatagagtcactt 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tacaacagaaagctttaactatggaaaaccagagttgactatgagtgcatagagtcactt 381

                                                                       
Query: 181 accaatattgtggtgacaaccacagttttgttttcaagcccagatgtgtcatttccagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 accaatattgtggtgacaaccacagttttgttttcaagcccagatgtgtcatttccagag 441

                                                                       
Query: 241 gggagctcggttagggtgacaaccattttatccacttcactccagtacccaatctgaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggagctcggttagggtgacaaccattttatccacttcactccagtacccaatctgaaaa 501

                                                                       
Query: 301 aagtgacagctgataaacacagagaaatgaaccatcttaatgtaataaactggatacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagtgacagctgataaacacagagaaatgaaccatcttaatgtaataaactggatacttt 561

                                                                       
Query: 361 tcgaacccatgcctgtatccaaactaataccctcattaaccagaatcctaaataacagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcgaacccatgcctgtatccaaactaataccctcattaaccagaatcctaaataacagca 621

                                                                       
Query: 421 aaaaatttacagtcataaacataatgtaattaggattgaaactgtatatatatcatcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaaaatttacagtcataaacataatgtaattaggattgaaactgtatatatatcatcttc 681

                                                                       
Query: 481 taaagtgggttggatcttcatttttattatttgtttatttggttttgtttattcaaggta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taaagtgggttggatcttcatttttattatttgtttatttggttttgtttattcaaggta 741

                                                                       
Query: 541 agaacatgggatgaatctatgctggtttgtgtagaactcaacatgcattcaaatcacaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agaacatgggatgaatctatgctggtttgtgtagaactcaacatgcattcaaatcacaat 801

                                                                     
Query: 601 cctcctgcccccggtctgtcattcatagattaaaggcataagcaagtacaactggctc 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cctcctgcccccggtctgtcattcatagattaaaggcataagcaagtacaactggctc 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space:   679752
Effective search space used:   679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)