Query= MSMg01no451_l17.b1 MSMg01no451_l17.b1 CHROMAT_FILE:
MSMg01no451_l17.b1 PHD_FILE: MSMg01no451_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:05 2005
(700 letters)
>mm_chr3_133939190_133940289
Length = 1100
Score = 1286 bits (665), Expect = 0.0
Identities = 689/697 (98%), Gaps = 1/697 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaagaagtggaatctattaatgaatcaaattataggaagttgaaaaaaagaagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaaagaagtggaatctattaatgaatcaaattataggaagttgaaaaaaagaagt 263
Query: 65 ttctgggtttgtttagatctttgcttatgtttttgtggtccttacctattactgggcatt 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctgggtttgtttggatctttgcttatgtttttgtggtccttacctattactgggcatt 323
Query: 125 gctgatatcactataactagacacaatatatctctccactgcagtttaaaacatacgagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 gctgatatcactataactagacacaatatatctctccactgcagtttaaaacatacgcgt 383
Query: 185 tctacctcctcacccatttcaccaggctcaggaggcaggcttgagtgaggggtcaccatc 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 tctacctcctcacccatttcaccaggctcaggagacaggcttgagtgaggggtcaccatc 443
Query: 245 aaggctagagactgttaaagcagtaggatgtaaggaacgtgtgatgtctctggttgcttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaggctagagactgttaaagcagtaggatgtaaggaacgtgtgatgtctctggttgcttt 503
Query: 305 ctgggaaggagtagacaaagaaccctggagtagcacagacaccatttgcttctcacagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgggaaggagtagacaaagaaccctggagtagcacagacaccatttgcttctcacagaa 563
Query: 365 gccttgatggggattgtggataaggtgagtgagtccgtggcagaagatgaacagagaaag 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcctagatggggattgtggataaggtgagtgagtccgtggcagaagatgaacagagaaag 623
Query: 425 aacaagtagaagatcagctttggcagcacaggcaagagtttggtgaca-taaggtcataa 483
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 624 aacaagtagaagatcagccttggcagcacaggcaagagtttggtgacaataaggtcataa 683
Query: 484 attatatatattatatgttaaaaacagtttatacaaaacacattttctacaacatatcat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attatatatattatatgttaaaaacagtttatacaaaacacattttctacaacatatcat 743
Query: 544 gatttagtttacactgtgcttcctccaggaacttgatctccgttcagaatcacatatctc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gatttagtttacactgtgcttcctccaggaacttgatctccgttcagaatcacatatctc 803
Query: 604 ttccctccttgcttagcacttcattcacaaagttatgtacaataaacttttagctggcaa 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atccctccttgcttagcacttcattcacaaagttatgtacaataaacttttagctggcaa 863
Query: 664 agattaaaaatagcctttttctctttcccttcccttt 700
||||||||||||||||||||| |||||||||||||||
Sbjct: 864 agattaaaaatagcctttttccctttcccttcccttt 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_l17.g1 MSMg01no451_l17.g1 CHROMAT_FILE:
MSMg01no451_l17.g1 PHD_FILE: MSMg01no451_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:05 2005
(632 letters)
>mm_chr3_134091478_134092509
Length = 1032
Score = 1210 bits (626), Expect = 0.0
Identities = 629/630 (99%)
Strand = Plus / Minus
Query: 1 cataggatgctctattgagaaagacggcacaggtcactaagtttgctggtagatggtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 cataggatgctctattgagaaagacggcacaggtcactaagtttgctggtagatggtgtg 771
Query: 61 tatcatgaaagtaaaagagtcggatatttgtgtgcagcctgaactagaacaatggaattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tatcatgaaagtaaaagagtcggatatttgtgtgcagcctgaactagaacaatggaattc 711
Query: 121 ctagtcactggtaaatgaaaggggaaatgaatggggaaaagagtgaagagtttgactcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ctagtcactggtaaatgaaaggggaaatgaatggggaaaagagtgaagagtttgactcct 651
Query: 181 gtttgaaatacttttccaaatactgatccaatagtcagttctccaagacctgatactaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gtttgaaatacttttccaaatactgatccaatagtcagttctccaagacctgatactaag 591
Query: 241 gcaggaaattactgttcttgtgatgtgtggtctcccatctcctcttgaaatggcaatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gcaggaaattactgttcttgtgatgtgtggtctcccatctcctcttgaaatggcaatgga 531
Query: 301 acaaaggatgtatacttcagaagtttgttgtaagaactggaaaaacttagtagtcagcca 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 530 acaaaggatgtatacttcagaagtttgttgtaagagctggaaaaacttagtagtcagcca 471
Query: 361 gtgagacaagtacttggaagcacctaagtgtgaactgttaactatggtgagggcagatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtgagacaagtacttggaagcacctaagtgtgaactgttaactatggtgagggcagatta 411
Query: 421 tcgagagatggtaatactctacattacaaggacagactttaaaatagcataacacttgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcgagagatggtaatactctacattacaaggacagactttaaaatagcataacacttgct 351
Query: 481 gtcccctcttctttcactcaaatgatggatgtccatctatttactggagggcaaaaatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtcccctcttctttcactcaaatgatggatgtccatctatttactggagggcaaaaatgg 291
Query: 541 gcactcaaacatagttaggacgttttcataaacatgtacatttgaaagcatttttccctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gcactcaaacatagttaggacgttttcataaacatgtacatttgaaagcatttttccctt 231
Query: 601 ggtcatcgatagtactttaccactgactat 630
||||||||||||||||||||||||||||||
Sbjct: 230 ggtcatcgatagtactttaccactgactat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
