BAC Information

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BAC

Clone NameMSMg01-451O07
Chromosome3 (Build37)
Map Location 104,304,792 - 104,305,092
singlet/doubletsinglet
Overlap geneLrig2
Upstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634, LOC668622
Downstream geneSlc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451O07.T7 (MSMg01no451_o07.b1)MSMg01-451O07.TJ (MSMg01no451_o07.g1)
ACCAG539276AG539277
length755711
length of high quality
(start - end)
---301 (82 - 382)
definitionCHROMAT_FILE: MSMg01no451_o07.b1 PHD_FILE: MSMg01no451_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:18 2005CHROMAT_FILE: MSMg01no451_o07.g1 PHD_FILE: MSMg01no451_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTGCCCCCTATAAATTGGGTCGCTAAACGACTCTTTTCCCGGAGAGAT
CCGCGGAATTCTTTTCCCTTGCACTGTCCCGTCTGGGTTTCTCCTGAAGA
GGCAGCAGAAAACTGCACAAACTCCACATCTGTATATTCCACTACATTTC
TCCTAGTGAACAAGATGAATGTTTGTACAAGATACAAACCACTCTTAATT
ATCTAACAAAAGGCAGGTTGGGTTTCCTCTCTACCAGGCAAACCACTGGA
ATTTGCAATGCACATAATCCTTGGGGTTTTCTTACATAAAGGCTGAAGTA
AACTTGGTTTGACAAAAGCACAAAGACTTCAGAGAAGTCATGGTGCTTTT
TGTGCATAGGGCTCAATACTCCCTAACAAAATCAGGAGAACCCCTGGGAG
CTCCCATATTCTGAGCTACCAATCATAGAGTACACTCAGGCTGGTCTTTG
CCGCACTCTCCACACTTAATATAGAGGACGGCTGTCTTGTCTGTTCTTCT
TTTTGTAGACTATGTACCATATCCTTGCTTAGACTCGATGCTCCACTGCG
CGTGGTATAACCTTTTTCCCTATTGTTCGACCCTGTTTTTCATTCTAACT
CACACTTCTCCAGTCCTGTGTTCTCCACCCTACTCCTCCTTTCTCTCTTT
ATTTTTCGCTATTGTTTACTACTTCTTCGTCCTACGTTCAGCCGATTTTT
ACCCGACCTTTTTCTCAACGTTCTCATATCCTTTCCGTTTCCTTTCTATC
ATCCC
TTGATAGAACAATGATAAAGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTAGTTGGCTTGCAGA
ACTTGTGACTTCTCTGAGCATTCTGTAAATAATTTACACCCTGATGGCAC
TGCACAACCACAGTAATGGCACCTCTGGCTCCGGATGATATAAGCACTTT
AATAATTCATTGCTTATTGCAGCTGCTTCCCTGTAGTATGAGTGGGATGG
GAGGGCCTTTACATATTAGTCATACATTATTACTTATATTTGTAGTGTTA
GAAAATGCAGGAAAGGCTATTGATTGCTAAATACATTTTGGGGATAGTTG
AAGGGAATAGTTGGGGCTTTCATTCTAATAATGGCAGTGCCTGTGATGCC
TTACTAAACCCTAAGTCCTCCTGGTTGATGATGATGATGAATATGCATAT
CTATTTTGCATCTGTGTGCGCATATGTCTGAGCAGATGTGGGTGCACATG
TGTGCACATGGGTGAAGGAGGTTCAAGGTTGGTGTTGGGAGTATTCCTTT
GATCATGGTTCCCTCTAATGAACTCAGAGCTCGCTGAATTTGTTAGTCTA
TCTTTTCCTTTTTGGTCTTGAGATCTTGTCCCTGATTGTAACCGCTTTGA
CTACAATTGGCCTTTGATGACCATGTGCCATTTTATGTGGGTATAAGGTA
CCTCAACTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_o07.g1 MSMg01no451_o07.g1 CHROMAT_FILE:
MSMg01no451_o07.g1 PHD_FILE: MSMg01no451_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:18 2005
         (301 letters)



>mm_chr3_104304592_104305292
          Length = 701

 Score =  559 bits (289), Expect = e-164
 Identities = 298/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtagttggcttgcagaacttgtgacttctctgagcattctgtaaataatttacaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgtagttggcttgcagaacttgtgacttctctgagcattctgtaaataatttacaccc 442

                                                                       
Query: 61  tgatggcactgcacaaccacagtaatggcacctctggctccggatgatataagcacttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatggcactgcacaaccacagtaatggcacctctggctccggatgatataagcacttta 382

                                                                       
Query: 121 ataattcattgcttattgcagctgcttccctgtagtatgagtgggatgggagggccttta 180
           ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 381 ataattcattgcttattgcagctgcttccctgtagcatgagtgggaggggagggccttta 322

                                                                       
Query: 181 catattagtcatacattattacttatatttgtagtgttagaaaatgcaggaaaggctatt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 catattagtcatacattattactcatatttgtagtgttagaaaatgcaggaaaggctatt 262

                                                                       
Query: 241 gattgctaaatacattttggggatagttgaagggaatagttggggctttcattctaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattgctaaatacattttggggatagttgaagggaatagttggggctttcattctaataa 202

            
Query: 301 t 301
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)