BAC Information

Click to search

BAC

Clone NameMSMg01-452A11
Chromosome3 (Build37)
Map Location 66,482,954 - 66,658,948
singlet/doubletdoublet
Overlap genenone
Upstream geneEG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452A11.T7 (MSMg01no452_a11.b1)MSMg01-452A11.TJ (MSMg01no452_a11.g1)
ACCAG539379AG539380
length734743
length of high quality
(start - end)		684 (51 - 734)602 (82 - 683)
definitionCHROMAT_FILE: MSMg01no452_a11.b1 PHD_FILE: MSMg01no452_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:28 2005CHROMAT_FILE: MSMg01no452_a11.g1 PHD_FILE: MSMg01no452_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,482,954 - 66,483,633)(66,658,347 - 66,658,948)
sequence
NNNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGAGTGACTCATGTTGCTTTCATCCTCATCCAACCTGGC
TAACCAGGTCCAGATCTTTCTTCCTTCCTCTAAGATCTCGCTTTTGACTA
GGCCTCCACCCAGTTTTTTGGTTAATTATCACAAGTCTTGGATTTTTTTG
TTGCAATCAATAAAAATTGATTTTTATACATCTATATCTCAAGCTAACTT
AAGCAAAAACGATCTTTGAAGTCATCTGGTAGTTTACCATATCTGAGGGA
CACTGGAAATTTTCATAAAAATAAGGAGACTTCAGACAGCCAGAAACAGG
CTGAGGTCCAAGCACAGGCATGAACTGGTGAGGCACAGCCATGATCACTA
GCTCAGCTACTGAGGACAATTGTGCCCCTGTGGTTTACATTGTCCATTGT
CTCATTTACATTGTCTTCTCCAGCTCCAGTGACTTAAGATAAAAGCAACA
AATTGACCAAGGCAGGGTGCTGTTTTAACTTTTAAAAAGTAAAAAATGCC
TATTAAATAACTCAGAAACATAAGTGAACTTTTTGAATAGTCACTTGAGA
TGATAGTTTTTAAAAATAGCTAATACTATATACAAAATTTTTCTGCAATC
TCCAAAATGCAAATTATAATTATTACATAATTGCTCACTTAAAAGGGAAA
TATTAGAAGATTTATAGCATTCTATATTTTGAAT

NNNTTCCTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTGTTTAAAAAGAAAAG
ATATTTAGATATAGTTATAGAATGGCGTTCATATTAGATGATTTTGCTTT
GAAACATGGTAAATAAGTTGGAGGGAAGCATAAAACACTCTGCAGGGCCA
TGACTCATAAATCTATAACATTACTTTTATTAATTTGGAATCTTCATGAG
GAGAGATGAAGAAAATACTCCTTGAAGTGATTTCCACGTTATGCTGATTT
TGTGATCATCTGTGTACTAAGAGACCACCCAATTCATCTCTGTTGTAACG
AACACCAGATTTTGTCCTGGGTTTGAAATCTCTGGCTATGACATGCAACA
TATTTAAAAAATCTGTTTGATTGATAGTTTAATCATTGTTCCCTATTACA
TCAGCAGCCAAGCCTAGTATTCCAATTTTGAAGGATTGTTTTGCCTCTGT
CCCTGTGTCACACAAAGTACTTGTGGCTTGCCAATGGCAGATCTGATTGC
AGCTTTATAGAATTCAGACGTAGTTGAAAGTTTAAATTTTCTGTTCTGTT
CTTGTGTTTATCTTTTAGACAGCACATGATTTCGATTCCTCCTGTTATAA
AATAAAATCAGCTTACCAATCATCTTCTGTCCTGTGTTCTTGTCTCTTCT
TTTCTTTCTTCCATATTTATATGGGTGTCACATTGTATCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_a11.b1 MSMg01no452_a11.b1 CHROMAT_FILE:
MSMg01no452_a11.b1 PHD_FILE: MSMg01no452_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:28 2005
         (684 letters)



>mm_chr3_66482750_66483833
          Length = 1084

 Score = 1276 bits (660), Expect = 0.0
 Identities = 675/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagagtgactcatgttgctttcatcctcatccaacctggctaaccaggtccaga 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagagggagtcatgttgctttcatcctcatccaacctggctaaccaggtccaga 264

                                                                       
Query: 65  tctttcttccttcctctaagatctcgcttttgactaggcctccacccagttttttggtta 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 tctttcttccttcctctaagatctcgcttttgactaggcctccacccacttttttggtta 324

                                                                       
Query: 125 attatcacaagtcttggatttttttgttgcaatcaataaaaattgatttttatacatcta 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attatcacaagtcttagatttttttgttgcaatcaataaaaattgatttttatacatcta 384

                                                                       
Query: 185 tatctcaagctaacttaagcaaaaacgatctttgaagtcatctggtagtttaccatatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatctcaagctaacttaagcaaaaacgatctttgaagtcatctggtagtttaccatatct 444

                                                                       
Query: 245 gagggacactggaaattttcataaaaataaggagacttcagacagccagaaacaggctga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagggacactggaaattttcataaaaataaggagacttcagacagccagaaacaggctga 504

                                                                       
Query: 305 ggtccaagcacaggcatgaactggtgaggcacagccatgatcactagctcagctactgag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtccaagcacaggcatgaactggtgaggcacagccatgatcactagctcagctactgag 564

                                                                       
Query: 365 gacaattgtgcccctgtggtttacattgtccattgtctcatttacattgtcttctccagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacaattgtgcccctgtggtttacattgtccattgtctcatttacattgtcttctccagc 624

                                                                       
Query: 425 tccagtgacttaagataaaagcaacaaattgaccaaggcagggtgctgttttaactttta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccagtgacttaagataaaagcaacaaattgaccaaggcagggtgctgttttaactttta 684

                                                                       
Query: 485 aaaagtaaaaaatgcctattaaataactcagaaacataagtgaactttttgaatagtcac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaagtaaaaaatgcctattaaataactcagaaacataagtgaactttttgaatagtcac 744

                                                                       
Query: 545 ttgagatgatagtttttaaaaatagctaatactatatacaaaatttttctgcaatctcca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgagatgatagtttttaaaaatagctaatactatatacaaaatttttctgcaatctcca 804

                                                                       
Query: 605 aaatgcaaattataattattacataattgctcacttaaaagggaaatattagaagattta 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 805 aaatgcaaattataattattacataattgctcacttaaaagggaaatattagaagattaa 864

                               
Query: 665 tagcattctatattttgaat 684
           ||||||||||||||||||||
Sbjct: 865 tagcattctatattttgaat 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_a11.g1 MSMg01no452_a11.g1 CHROMAT_FILE:
MSMg01no452_a11.g1 PHD_FILE: MSMg01no452_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:28 2005
         (602 letters)



>mm_chr3_66658147_66659148
          Length = 1002

 Score = 1156 bits (598), Expect = 0.0
 Identities = 601/602 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgtttaaaaagaaaagatatttagatatagttatagaatggcgttcatattagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aattgtttaaaaagaaaagatatttagatatagttatagaatggcgttcatattagatga 743

                                                                       
Query: 61  ttttgctttgaaacatggtaaataagttggagggaagcataaaacactctgcagggccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttttgctttgaaacatggtaaataagttggagggaagcataaaacactctgcagggccat 683

                                                                       
Query: 121 gactcataaatctataacattacttttattaatttggaatcttcatgaggagagatgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gactcataaatctataacattacttttattaatttggaatcttcatgaggagagatgaag 623

                                                                       
Query: 181 aaaatactccttgaagtgatttccacgttatgctgattttgtgatcatctgtgtactaag 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 622 aaaatactccttgaagtgatttccacattatgctgattttgtgatcatctgtgtactaag 563

                                                                       
Query: 241 agaccacccaattcatctctgttgtaacgaacaccagattttgtcctgggtttgaaatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agaccacccaattcatctctgttgtaacgaacaccagattttgtcctgggtttgaaatct 503

                                                                       
Query: 301 ctggctatgacatgcaacatatttaaaaaatctgtttgattgatagtttaatcattgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctggctatgacatgcaacatatttaaaaaatctgtttgattgatagtttaatcattgttc 443

                                                                       
Query: 361 cctattacatcagcagccaagcctagtattccaattttgaaggattgttttgcctctgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctattacatcagcagccaagcctagtattccaattttgaaggattgttttgcctctgtc 383

                                                                       
Query: 421 cctgtgtcacacaaagtacttgtggcttgccaatggcagatctgattgcagctttataga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctgtgtcacacaaagtacttgtggcttgccaatggcagatctgattgcagctttataga 323

                                                                       
Query: 481 attcagacgtagttgaaagtttaaattttctgttctgttcttgtgtttatcttttagaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 attcagacgtagttgaaagtttaaattttctgttctgttcttgtgtttatcttttagaca 263

                                                                       
Query: 541 gcacatgatttcgattcctcctgttataaaataaaatcagcttaccaatcatcttctgtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gcacatgatttcgattcctcctgttataaaataaaatcagcttaccaatcatcttctgtc 203

             
Query: 601 ct 602
           ||
Sbjct: 202 ct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |