Query= MSMg01no452_b08.b1 MSMg01no452_b08.b1 CHROMAT_FILE:
MSMg01no452_b08.b1 PHD_FILE: MSMg01no452_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:32 2005
(696 letters)
>mm_chr3_108092179_108093273
Length = 1095
Score = 1309 bits (677), Expect = 0.0
Identities = 689/693 (99%), Gaps = 1/693 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactctgttgaccaggctggcctcgaactcagaaatccgcctgtctctgcctcc 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggctggcctcgaactcagaaatccgcctgtctctgcctcc 263
Query: 64 caagtgctgggatcaaaggcgtgcgccaccaccgcccaggcataaatgtagttttaagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagtgctgggatcaaaggcgtgcgccaccaccgcccaggcataaatgtagttttaagag 323
Query: 124 atagttggattgaaggcagacagactctttaaatcaatagactggtaggtgaaagctagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atagttggattgaaggcagacagactctttaaatcaatagactggtaggtgaaagctagc 383
Query: 184 cacgtgaggtctatttacatactgaggtcattattccctctctaactcttaatgcaacct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacgtgaggtctatttacatactgaggtcattattccctctctaactcttaatgcaacct 443
Query: 244 caagaacccacttgtggcactctgctgtaataccgtgcgagttctgtttggcgttccagt 303
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 caagaacccacttgtggcactctgctgtaataccgtgcgagttctgtttggtgttccagt 503
Query: 304 ctctgttcctcagttccccatctgcgatgatgttagaagttttggattagcataaaaatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctgttcctcagttccccatctgcgatgatgttagaagttttggattagcataaaaatg 563
Query: 364 ttttgttttgtttttaaatcctatgctcctcgtggaagaagaggccagaggttgtgatca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttgttttgtttttaaatcctatgctcctcgtggaagaagaggccagaggttgtgatca 623
Query: 424 cagatgtttattggttgattccaaatttagaagcaagtcttggctgctcagcctgctggt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagatgtttattggttgattccaaatttagaagcaagtcttggctgctcagcctgctggt 683
Query: 484 tgagcttgcacacagtgtggatttcacatctgaggtggtggcctgccactctcagaagtt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgagcttgcacacagtgtggatttcacatctgaggtggtggcctgccactctcagaagtt 743
Query: 544 tcttcagtggcatgtgagcattttcaaaagacagtaggatgttttccaggcaattacgaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcttcagtggcatgtgagcattttcaaaagacagtaggatgttttccaggcaattacgaa 803
Query: 604 gattctttgccccttattttagggagagtaggtactttatcatcccttgttgactgggaa 663
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 804 gattctttgccccttattttagggagagtag-tactttatcatcccttgttgactaggaa 862
Query: 664 tttcagtgctaataaaagctactagcttgaata 696
|||||||||||||||||||||||||||||||||
Sbjct: 863 tttcagtgctaataaaagctactagcttgaata 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1095
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1085
Effective search space: 744310
Effective search space used: 744310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_b08.g1 MSMg01no452_b08.g1 CHROMAT_FILE:
MSMg01no452_b08.g1 PHD_FILE: MSMg01no452_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:33 2005
(608 letters)
>mm_chr3_108283897_108284905
Length = 1009
Score = 1147 bits (593), Expect = 0.0
Identities = 605/609 (99%), Gaps = 1/609 (0%)
Strand = Plus / Minus
Query: 1 cacagtgtgagcatcacaccagccgtccttgggatcccagaggagaggccgagggccgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 cacagtgtgagcatcacaccagccgtccttgggatcccagaggagaggccgagggccgta 750
Query: 61 acggagggggcaggctgagacataagtgattcctctttttgtggttgctagatgatgcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 acggagggggcaggctgagacataagtgattcctctttttgtggttgctagatgatgcta 690
Query: 121 tacagtggctagtttgcccctatgacttcatcccaggagccagagcgttccagctttgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tacagtggctagtttgcccctatgacttcatcccaggagccagagcgttccagctttgag 630
Query: 181 gctgtgttttctggaaaaccatagaagaatgagcaatcgtcagtctcccttactgccagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gctgtgttttctggaaaaccatagaagaatgagcaatcgtcagtctcccttactgccagc 570
Query: 241 cccctctggtcctgttctgatcgctccattagagatgcttgtagtgcgtatgatgcacgg 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 569 cccctctggtcctgttctgatcgctccattagagatgcttgtagtgcatatgatgcacgg 510
Query: 301 atcatatgtggaggatcagggaagagtgggagagggttaaaaacacaaagctacaaaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atcatatgtggaggatcagggaagagtgggagagggttaaaaacacaaagctacaaaagg 450
Query: 361 caagttagtaatgcccacttttgtgatgaattaacacctaccttatgcctttttgaaggt 420
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caagttagtgatgcccatttttgtgatgaattaacacctaccttatgcctttttgaaggt 390
Query: 421 tgagctaaatagaggcaataacgtcctctattggagaaccacagctttctcggtgtggtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgagctaaatagaggcaataacgtcctctattggagaaccacagctttctcggtgtggtc 330
Query: 481 caaagtgtccaagcccgtgcttgttagaaacatcgccataacaggtacagaaaacagctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caaagtgtccaagcccgtgcttgttagaaacatcgccataacaggtacagaaaacagctt 270
Query: 541 ggatctgggtctgctgctggcttcctggactcctggcttctagggagggatgggca-ttg 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 269 ggatctgggtctgctgctggcttcctggactcctggcttctagggagggatgggcatttg 210
Query: 600 gtccccagg 608
|||||||||
Sbjct: 209 gtccccagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space: 597402
Effective search space used: 597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
