BAC Information

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BAC

Clone NameMSMg01-452E09
Chromosome3 (Build37)
Map Location 35,196,079 - 35,196,539
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452E09.T7 (MSMg01no452_e09.b1)MSMg01-452E09.TJ (MSMg01no452_e09.g1)
ACCAG539564AG539565
length729741
length of high quality
(start - end)
461 (70 - 530)458 (82 - 539)
definitionCHROMAT_FILE: MSMg01no452_e09.b1 PHD_FILE: MSMg01no452_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:47 2005CHROMAT_FILE: MSMg01no452_e09.g1 PHD_FILE: MSMg01no452_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGGCGTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAACATTGTTATTATACCCATCTCTGGTTTTATCTGCCCAC
TGTTTTTTTATATGTGGTAAAGTAATACAATGATGTGGACTAAGATTCAA
CGAGCGACTTTCCAGGAGGTGACTCCTGTTTCTTTCACCTTTCTCTTCCC
TTCTTATTAGTTTTTCTTTCTTGAGAAAAGATCTCACCTTGAATCCAGGT
TCATAACTCAACTTCCCAGATGCTGGAATTACAAGAGAGAGTCATCCCAC
CTAGTTCTGTTTCCTAATCTCGTATTGTAGCACTCTGCTTTCTGCTCCCT
TGGCTGTAGCCAACCAAGTCCTGTTGGACTGACTCTGGGCCTTTGTGCTG
GTTGTGTTGACTGTTCTCTCTGTCTTTGACAATTCCACTACAATGCCCTC
TCCTTGAAGCTCATGTTTTGAGGTCTGCCTGACATTCTTGTGCACTCTGT
CATGTTTCTTCTATTGTCTTTTTCTCTACGTTGCTGTCACCGGATTGGAG
GTCAAGGTGGTGGTGGTGGAGAGAAACACCACTTTTTAATTTTGTTATTT
TAATTTGCTCTGTTTTAAGTATTATCTCTAATCTTTTTTTGCTATAATGA
AGCTTTGCTGGGACAAAAACAGCTTTATTCATGTATTTTACCTTCAATAG
ATATTTGTTAAATGAACAATGAAATGATN
NTTTCACAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAACTGAGGAATCTCAAA
TGGCTGAGAAGCACCTAAAGAAATTTTCAAAGTCTTTAGTGATCAGATAA
ATGCAAATCAAAATGACACTGAGATTTCACCTTACACCAATCAGAATGGC
TAAGATCAAAACCTCAGGTGACAACACATGTTGGAGAGGATGTGGTGAAA
GAGGAACACTCCTCCATTGCTGGTAGGATTGCAAACTGGTACCAACTAGT
CTGGAAATCAATCTGGAGGTTCCTCAGAAAATTGGAAATAGATCTACCTG
TAGACCCAGCTATACCACTCTTGGGAATATACCCAAAAGATGCCCCACCA
TGCCACAAGGGCACGTGTTCCACTATGTTCATAGGAGCCTTATTTATGAT
AGCCAGAAGCTGAAAACAACATAGATGTCCCACAACAGAAGAATGGATAC
AGAAAATATGATTCATTTACGCAATGGAATACTACTTAGCTATTAAGAAT
GATGACACCCTGACTTTTGCAGGGAAATGGATGGAACTAGAAAATATCAT
CCTGAGTGAGGTAACTCAAACCAAAAAGACTTGCATGGTATGTACTCCCT
AATAAGTAGATATTAAGCCAAATCTTTTTACTTAAAACTAAAAACAAATA
CGAACTTTCCAACCCCCCCCTAACAAAAACTACTACTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_e09.b1 MSMg01no452_e09.b1 CHROMAT_FILE:
MSMg01no452_e09.b1 PHD_FILE: MSMg01no452_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:47 2005
         (461 letters)



>mm_chr3_35195879_35196739
          Length = 861

 Score =  876 bits (453), Expect = 0.0
 Identities = 459/461 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attatacccatctctggttttatctgcccactgtttttttatatgtggtaaagtaataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 attatacccatctctggttttatctgcccactgtttttttatatgtggtaaagtaataca 602

                                                                       
Query: 61  atgatgtggactaagattcaacgagcgactttccaggaggtgactcctgtttctttcacc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 601 atgatgtggactaagattcaacgagcgactttccaggaagtgactcctgtttctttcacc 542

                                                                       
Query: 121 tttctcttcccttcttattagtttttctttcttgagaaaagatctcaccttgaatccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttctcttcccttcttattagtttttctttcttgagaaaagatctcaccttgaatccagg 482

                                                                       
Query: 181 ttcataactcaacttcccagatgctggaattacaagagagagtcatcccacctagttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttcataactcaacttcccagatgctggaattacaagagagagtcatcccacctagttctg 422

                                                                       
Query: 241 tttcctaatctcgtattgtagcactctgctttctgctcccttggctgtagccaaccaagt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 421 tttcctaatctcgtattgtagcactctgctttctgctcccttggctgtagccaaccgagt 362

                                                                       
Query: 301 cctgttggactgactctgggcctttgtgctggttgtgttgactgttctctctgtctttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctgttggactgactctgggcctttgtgctggttgtgttgactgttctctctgtctttga 302

                                                                       
Query: 361 caattccactacaatgccctctccttgaagctcatgttttgaggtctgcctgacattctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caattccactacaatgccctctccttgaagctcatgttttgaggtctgcctgacattctt 242

                                                    
Query: 421 gtgcactctgtcatgtttcttctattgtctttttctctacg 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgcactctgtcatgtttcttctattgtctttttctctacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)