BAC Information

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BAC

Clone NameMSMg01-452F21
Chromosome3 (Build37)
Map Location 59,594,007 - 59,594,548
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407
Downstream geneLOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452F21.T7 (MSMg01no452_f21.b1)MSMg01-452F21.TJ (MSMg01no452_f21.g1)
ACCAG539636AG539637
length761635
length of high quality
(start - end)		544 (71 - 614)115 (91 - 205)
definitionCHROMAT_FILE: MSMg01no452_f21.b1 PHD_FILE: MSMg01no452_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:54 2005CHROMAT_FILE: MSMg01no452_f21.g1 PHD_FILE: MSMg01no452_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCCTTGTTTACGTCAAAGAGAGAATGAGGCATGAATGTGAAGTT
CCAGAAGGGTTGAGGGGAGCAAGAATATGAGGGAACTTGTTTTAACAGAG
ATGTGGTAAGAACTTCAAAGCTCTTGGGAGGTCCTGTTTGAGGAAAGGTC
AGAAGTTTTGTCTGAATTATCTTGTTAAAGAGGGACTCAGTGGGAACTTG
AGTTAAACCTTAATTTAGAGTTTTACCTATTTTGACAAAAATACTCCTCA
CTCCAATAAACATTTTTTTTGTGTGGTAGAAATGGCTCAGACACCTATGG
CCTGGCTTAGAAAAATGCCAAAAGCTACACAGACTTTTGCTTGGCATGGA
TTCTGTGTGAAGAAAATTCCAGGGAAAGCTGCAACACTTACCTCTGCCCC
AAGCAATTTTCAGGTGCTTCATGAAATTACAAAAGTATGAAAATCAAAAT
ACAAAAGTAATTTCTTGTTGCAGAAATTCCTTTCTTTTATTATTTTCACA
AGGAAAACAATTTAAAGGTTTACTAGTGACTCCCTTAGGAGGCTGGGAAA
TGCCCACACACCNNNTTTTNTTTTTNTTTTTTTTTTTTTTTTTTTTTAAA
GCAGCAGATGCAATTGATTTTGTACCTTCTAGAATATGCAATTATCCACT
CAACTTCATTTTTAACCCAGGCATTTGGGAGTACCTATGTTATTGTCAGA
ATAAAATATCN

NTCTTCTTTTTNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTATTTGAG
GCTAGCCTGGTCTACAGAGTGTGTTCCAGGACAGCCAGAGTTACACAGAA
GAAACCCTGTCTCAAAAAAACAAAAAAAAAGTCAAACAAACAAACAAAAA
AACTCAAAAAAACCCAAATACCCCCCCCCAAAATAAAACCACCCTTCTTT
CTAAACAGCATATGATTACCCAATAATGGCCCCCATTTTTTTCCAAGAAA
CTTATTTTAAAAAAAGACCTTTAATTTTTTTCCCCCTTTTAAAAAAANTA
GGGGGGGGGGAGAAAAAAAAAAATAATTTTTTCNGTAAAAATAAAAAAAA
ANNAGCAAANAAAGAATGTTGTTTTGTTGCAACCCCCTTTTTTTGAAAAA
AACCCCGGCAAAAATTTTATAAAAAAAAATCCCCCTTTTTCGCGGGGGGG
AAGGGATGGTGTGTTTTATNTTTTCTCCCCCCCGCCCCCCCCCAAATTTT
TTTTTTTAAAAAAAGAGGGGGGATATTATATTATAAACTCTTCATGAGGG
AAAGAAAAAAAAAAAGGTAAGAAGTGTTGTTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_f21.b1 MSMg01no452_f21.b1 CHROMAT_FILE:
MSMg01no452_f21.b1 PHD_FILE: MSMg01no452_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:54 2005
         (544 letters)



>mm_chr3_59593807_59594750
          Length = 944

 Score =  971 bits (502), Expect = 0.0
 Identities = 532/542 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagagagaatgaggcatgaatgtgaagttccagaagggttgaggggagcaagaatatga 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagagagaatgaggcatgactgtgaagttccagaagggttgaggggagcaagaatatga 260

                                                                       
Query: 61  gggaacttgttttaacagagatgtggtaagaacttcaaagctcttgggaggtcctgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaacttgttttaacagagatgtggtaagaacttcaaagctcttgggaggtcctgtttg 320

                                                                       
Query: 121 aggaaaggtcagaagttttgtctgaattatcttgttaaagagggactcagtgggaacttg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 aggaaaggtcagaagttttgtctgaattatcttgttaaagagggactcagtgagaacttg 380

                                                                       
Query: 181 agttaaaccttaatttagagttttacctattttgacaaaaatactcctcactccaataaa 240
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 agttaaactttaatttagagttttacctattttgacaaaaatactcctcactgcaataaa 440

                                                                       
Query: 241 cattttttttgtgtggtagaaatggctcagacacctatggcctggcttagaaaaatgcca 300
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 cattttttttttgtggtagaaatggctcagacacctatgacctggcttagaaaaatgcca 500

                                                                       
Query: 301 aaagctacacagacttttgcttggcatggattctgtgtgaagaaaattccagggaaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagctacacagacttttgcttggcatggattctgtgtgaagaaaattccagggaaagct 560

                                                                       
Query: 361 gcaacacttacctctgccccaagcaattttcaggtgcttcatgaaattacaaaagtatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaacacttacctctgccccaagcaattttcaggtgcttcatgaaattacaaaagtatga 620

                                                                       
Query: 421 aaatcaaaatacaaaagtaatttcttgttgcagaaattcctttcttttattattttcaca 480
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 aaatcaaaatacaaatgtaatttcttgttgcagaaattcctttcttttattatttttaca 680

                                                                       
Query: 481 aggaaaacaatttaaaggtttactagtgactcccttaggaggctgggaaatgcccacaca 540
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggaaaacaagttcaaggtttactagtgactcccttaggaggctgggaaatgcccacaca 740

             
Query: 541 cc 542
           ||
Sbjct: 741 cc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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