BAC Information

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BAC

Clone NameMSMg01-452G03
Chromosome3 (Build37)
Map Location 23,979,157 - 23,979,691
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452G03.T7 (MSMg01no452_g03.b1)MSMg01-452G03.TJ (MSMg01no452_g03.g1)
ACCAG539648AG539649
length756758
length of high quality
(start - end)
538 (47 - 584)525 (77 - 601)
definitionCHROMAT_FILE: MSMg01no452_g03.b1 PHD_FILE: MSMg01no452_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:55 2005CHROMAT_FILE: MSMg01no452_g03.g1 PHD_FILE: MSMg01no452_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTAAATGTTTGGTTTCATGATATTTACATTGTTTAATTGTA
CAACTGAAATTGATTCTTATTCTTGGAACTGGTTTTCGTTTACAAAACTC
GAGGCTGTTTGTAGATGGTAATAATACCTGAGTGCTTTAATCACAAAAGA
CCTTTATATAATGAGCATGAATTTTTATTTATTGTGTGTGTGTGTATAAA
ACCTTAAATGTTTCAATTACAATATAATTATTCATTCATTAATTGGAGAA
ATGTGTGGCATCTCCTATGTACCAGAATGTAAAATCTGGACTCCTGATGC
ATGTATCTACATACATGTTGAGAGAAACGGATAACAGTTAATAGGGTTAA
TAATAAAGTCAACAGTGGTTATCAAATGATAGCTAAGCAATATAATATGC
TAGTATTTAAGACATGCTAAAAGGGTTGTAACTGCCCATGTCATGAGGTA
AATAAATAAATAGATATCAACACCACCCTCCATCCCAAAATCCCAGAAAC
CCTCTTAGATGAGTTTCTAGAATACTTACATTAAGATTTTAATTTTCTGG
CATACTCTCAGCTGGACCCCTGTTGGAAGCCGACCTGCAGCTCACTTGAA
CCTGGTTTCACCTGGGAGGCAAGTCAGGGCTGAAAAGAGAAGGGAATTAG
GTGGTCGAGAGAAAAATGGAACTAAATTAAGATTCCTGATAAAAGCTCAA
AAGTTT
NTAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTGAGGAATACTGAATGACT
GAGAAGTACCTGAAAAAATTCTCAGCATCCTTAATCATCAGGGAAATGCA
ACTCAAAACAACCCTGAGATTCCACCTCACACCAGCCAGAATGGCTAAGA
TAAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
ACACTCCTCCATCATTTGTAGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGTGGTTCCTCAGAAAATTGGACATACTACCACCAGAGGATC
CCGCAATACCTCTCCTGGGCATAGTTCCAGAAAATGTTCCAACCAGTAAG
AAGGCTACATGCACAACTATGTTCATAGCAGCCTTATTTGTAATAGCCAA
AAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATATAGAAAA
TGTGGTACATTTACACAATGGAGTAGTACTCAGCTATAACAATGAATGAA
TTTATGAAATTCCTAGGCTAATAGATGGACCTGGAGGGCATCTTCCTGTG
TGAGGGTACCTAATCACAAAAAAACTCACATGATATGTACTCCCTGATAA
GTGGATATTAGCCCAGAAACTTTAAATACTCAAGATATAAGATACAATTT
GCTAAACACATGAAACTCCAGAAGAACAAAGACCAAAATGGGGATACTTT
ACCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_g03.b1 MSMg01no452_g03.b1 CHROMAT_FILE:
MSMg01no452_g03.b1 PHD_FILE: MSMg01no452_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:55 2005
         (538 letters)



>mm_chr3_23978954_23979891
          Length = 938

 Score = 1027 bits (531), Expect = 0.0
 Identities = 534/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgtaaatgtttggtttcatgatatttacattgtttaattgtacaactgaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggaattctttgtaaatgtttggtttcatgatatttacattgtttaattgtacaactgaaa 679

                                                                       
Query: 64  ttgattcttattcttggaactggttttcgtttacaaaactcgaggctgtttgtagatggt 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 678 ttgattcttattcttggaactggttttcgtttacaaaacttgaggctgtttgtagatggt 619

                                                                       
Query: 124 aataatacctgagtgctttaatcacaaaagacctttatataatgagcatgaatttttatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aataatacctgagtgctttaatcacaaaagacctttatataatgagcatgaatttttatt 559

                                                                       
Query: 184 tattgtgtgtgtgtgtataaaaccttaaatgtttcaattacaatataattattcattcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tattgtgtgtgtgtgtataaaaccttaaatgtttcaattacaatataattattcattcat 499

                                                                       
Query: 244 taattggagaaatgtgtggcatctcctatgtaccagaatgtaaaatctggactcctgatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taattggagaaatgtgtggcatctcctatgtaccagaatgtaaaatctggactcctgatg 439

                                                                       
Query: 304 catgtatctacatacatgttgagagaaacggataacagttaatagggttaataataaagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 catgtatctacatacatgttgagagaaacggataacagttaatagggttaataataaagt 379

                                                                       
Query: 364 caacagtggttatcaaatgatagctaagcaatataatatgctagtatttaagacatgcta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caacagtggttatcaaatgatagctaagcaatataatatgctagtatttaagacatgcta 319

                                                                       
Query: 424 aaagggttgtaactgcccatgtcatgaggtaaataaataaatagatatcaacaccaccct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaagggttgtaactgcccatgtcatgaggtaaataaataaatagatatcaacaccaccct 259

                                                                  
Query: 484 ccatcccaaaatcccagaaaccctcttagatgagtttctagaatacttacattaa 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccatcccaaaatcccagaaaccctcttagatgagtttctagaatacttacattaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)