NNNNTTTCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATGAAATTCCTAGGCAAATGGATGAACCTGGAGGCATC
ATCTTGAGTGAGGTAACCCAATCACAAAAGAACTCACACAATATGTACTC
ACTGATAAGAAATTTAGAATACCCAAGATATAAGATACAATTTGATAAAC
TCATGAAACTCAAGAAGAATGAAGACCAAAGTGTGGACACTTTGCCCCTT
TTTAGAATTGGGAACAAAGACCCATGGAATGAGTTACAGACACTACATTT
GGAGCTGAGATGAAAGGATGGACCATCTACATACTGACATATCTGGGGAT
CCATCCCATAATCAGCTTCCAAACTCTGACACCTTTGCATACACTAGCAA
GATTTTGCTGAAAGGACCCAGATATGGCTGTCTCTTGTGAGACTATGCCG
GGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAT
CACAGGGCCCCCAGTGGAGGAGCAATTGAAAATACCCAAGGAGCTAAAGG
GATCTGCAATCCTATAGGTGAAACAACATTATGAACTAACTAGTACCCCC
CCCTCGCCCCCTCCCCGAGCTCATGTCTCTAGCTGCATATGAATCAGAAG
ATGGCCTAGTTGGCCATCAGTGGAAAGAGAGGCTCATTGGACTTGCAAAG
TTTATATGCCTTAGTACAGGGAAGTGCCAGGGCCAAGAAGTGGGAGTGGT
G

NTTTCTACGATGCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCAGAATTTGAGCATG
TACTGTGCTTATGTCCTTGGAAGTGAAAATTTTATAATTTCTTACACATT
TTCCCCAAGATTGAAAAAAATCCACTCATTTTTCATAGTAACTGTAAATC
TGTATCAGTTATTATACTTGATATCATTTCCCTCATCATGAATGGGTGAA
AATGTTTATGAAAGGAAATGGTAATTGATATGCGAATAATCTTCAAAACC
AAAAAAAATGTTGTTGTTCGAATTTTTATGATTATTCCAACAGCAGGTTT
CTTTCTGCCCTGTCATATCTTCTATAATTCATAACGTCAGTTACTTTCAA
TGGGCATGTGACCTGTATTTCTCTCTACAATGAACATCTTCACTCTCTTA
CTGTGCACATTTTAATAAAATAAAAAGAGTTGGAGTTTAAGAAGATCATG
CCACATGTACAATTCTGGATACAATCTACATACAAAGGATCTGAGAGCTG
ATTTAAAGGGAAAAAATCCTCAAAGACATGACTACTATGTTAAACTGAGT
AAGAGCACAAGGAGCCCTAGCAATGACTCAGATGGACAAGATGCCCGTGT
AGAAGATGCAGGGGGCAATTGCCCATGGCTGGGAGGGGAAAGATAGCATT
GATATCAAGAAAATAGTGAAGCTGACCCAGAAGTTCTTCGCTTCCAGTAA
GGG

Query= MSMg01no452_l06.g1 MSMg01no452_l06.g1 CHROMAT_FILE:
MSMg01no452_l06.g1 PHD_FILE: MSMg01no452_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:20 2005
         (644 letters)



>mm_chr3_61502415_61503457
          Length = 1043

 Score = 1222 bits (632), Expect = 0.0
 Identities = 641/644 (99%), Gaps = 1/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccagaatttgagcatgtactgtgcttatgtccttggaagtgaaaattttataatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccagaatttgagcatgtactgtgcttatgtccttggaagtgaaaattttataatttc 260

                                                                       
Query: 61  ttacacattttccccaagattgaaaaaaatccactcatttttcatagtaactgtaaatct 120
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ttacacatttttcccaagattgaaaaaa-tccactcatttttcatagtaactgtaaatct 319

                                                                       
Query: 121 gtatcagttattatacttgatatcatttccctcatcatgaatgggtgaaaatgtttatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtatcagttattatacttgatatcatttccctcatcatgaatgggtgaaaatgtttatga 379

                                                                       
Query: 181 aaggaaatggtaattgatatgcgaataatcttcaaaaccaaaaaaaatgttgttgttcga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 380 aaggaaatggtaattgatatgcgaataatcttcaaaaccaaaaaaaatgttgttgttcaa 439

                                                                       
Query: 241 atttttatgattattccaacagcaggtttctttctgccctgtcatatcttctataattca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttttatgattattccaacagcaggtttctttctgccctgtcatatcttctataattca 499

                                                                       
Query: 301 taacgtcagttactttcaatgggcatgtgacctgtatttctctctacaatgaacatcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taacgtcagttactttcaatgggcatgtgacctgtatttctctctacaatgaacatcttc 559

                                                                       
Query: 361 actctcttactgtgcacattttaataaaataaaaagagttggagtttaagaagatcatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 actctcttactgtgcacattttaataaaataaaaagagttggagtttaagaagatcatgc 619

                                                                       
Query: 421 cacatgtacaattctggatacaatctacatacaaaggatctgagagctgatttaaaggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cacatgtacaattctggatacaatctacatacaaaggatctgagagctgatttaaaggga 679

                                                                       
Query: 481 aaaaatcctcaaagacatgactactatgttaaactgagtaagagcacaaggagccctagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaatcctcaaagacatgactactatgttaaactgagtaagagcacaaggagccctagc 739

                                                                       
Query: 541 aatgactcagatggacaagatgcccgtgtagaagatgcagggggcaattgcccatggctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aatgactcagatggacaagatgcccgtgtagaagatgcagggggcaattgcccatggctg 799

                                                       
Query: 601 ggaggggaaagatagcattgatatcaagaaaatagtgaagctga 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggaggggaaagatagcattgatatcaagaaaatagtgaagctga 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space:   654922
Effective search space used:   654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)