Query= MSMg01no453_e18.b1 MSMg01no453_e18.b1 CHROMAT_FILE:
MSMg01no453_e18.b1 PHD_FILE: MSMg01no453_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:07 2005
(620 letters)
>mm_chr3_80841682_80842704
Length = 1023
Score = 1141 bits (590), Expect = 0.0
Identities = 611/619 (98%), Gaps = 3/619 (0%)
Strand = Plus / Plus
Query: 5 gaattcagganaggtattaaattccttaatcgaaacactgtattatgggaaggcaggcac 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggaaaggtattaaattccttaatcgaaacactgtattatgggaaggcaggcac 264
Query: 65 caataaagaattaggtgagaaatacagaggtcaagaggccacttggacattttcaaagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caataaagaattaggtgagaaatacagaggtcaagaggccacttggacattttcaaagga 324
Query: 125 attggttatggtttttctcttgaac--tttttttttttttaaagcgtgcctttgtgcccc 182
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 325 attggttatggtttttctcttgaactttttttttttttttaaaacgtgcctttgtgcccc 384
Query: 183 gaacccctcaccttttggtggtgtatttttttgtatgttcatgaatgactattttgtgtg 242
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaccctcaccttttggtggtgtatttttttgtatgttcatgaatgactattttgtgtg 444
Query: 243 tgttggaagcgatctaatcctgcataggaaatgagaattactttcagctttcaagtgtac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttggaagcgatctaatcctgcataggaaatgagaattactttcagctttcaagtgtac 504
Query: 303 ctgaaatgtttagaaaaatttcagatgcgagttcccctgggctgggattgcacagagctg 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgaaatgtttagaaaactttcagatgcgagttcccctgggctgggattgcacagagctg 564
Query: 363 gagaaaagcctctttcataagtccagggaagcttcgggggtgtaatttgcttagcctctg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagaaaagcctctttcataagtccagggaagcttcgggggtgtaatttgcttagcctctg 624
Query: 423 aaccccatatgattcacagcattcaatttctaaactcctttgctcttgatctaccactat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaccccatatgattcacagcattcaatttctaaactcctttgctcttgatctaccactat 684
Query: 483 aaagccattttt-gagactcttttgtaaatagaaattttataccacacatgaaaccacaa 541
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaagccattttttgagactcttttgtaaatagaaattttataccacacatgaaaccacaa 744
Query: 542 tgctaatgtaggcagcctaaaactggaatattaaataccctgtttacaatacaaggggag 601
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgctaatgtaggcatcctaaaactggaatattaaataccctgtttacaatacaaggggag 804
Query: 602 gttctcgctgctatttaag 620
|||||||||||||||||||
Sbjct: 805 gttctcgctgctatttaag 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1023
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1013
Effective search space: 617930
Effective search space used: 617930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_e18.g1 MSMg01no453_e18.g1 CHROMAT_FILE:
MSMg01no453_e18.g1 PHD_FILE: MSMg01no453_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:07 2005
(676 letters)
>mm_chr3_80982875_80983950
Length = 1076
Score = 1081 bits (559), Expect = 0.0
Identities = 590/605 (97%), Gaps = 8/605 (1%)
Strand = Plus / Minus
Query: 1 tttcctcggttggacagacttctttcttcagaacattgacatgaaatatgacgaagggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttcctcggttggacagacttctttcttcagaacattgacatgaaatatgacgaagggac 546
Query: 61 agcgccctctccccaatatccactaaactgctttgttctttgcccatataattaataact 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 545 agcgccctctccccaatatccactaaagtgctttgttctttgcccatataattaataact 486
Query: 121 gtctggcaatcagtcatgcattcttcaacagtacctgaggcactaagtgtccttctaacc 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 485 gtctggcaatcagtcatgcattcttcaacagtacctgaggcaccaagtgtccttctaacc 426
Query: 181 cctcctgacagaggaaacctccatgatggctgtgcacagacttaactccacataagccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cctcctgacagaggaaacctccatgatggctgtgcacagacttaactccacataagccat 366
Query: 241 ttacaagttaggatgaaggaaagcatccctgggttcggatgcagcccagaagccagatgt 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 365 ttacaagttaggatgaaggaaagcatccctgggttcagatgcagcccagaagccagatgg 306
Query: 301 cactctttccatgcagcactacagaatttttgttttattcaattggtggcagtggcatta 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 305 cactctttccatgcagcactacagaatttttgttttattcaattggtggcggtggcatta 246
Query: 361 gtttgtttccgttttatataattcaaccaacaaaaataa--------caaaaacttctgt 412
|||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 245 gtttgtttccattttatataattcaaccaacaaaaaaaaaaaaaaaacaaaaacttctgt 186
Query: 413 atccaagcgggtatcactgaatatacacacttggatagaggtaaatcattttataaagtg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atccaagcgggtatcactgaatatacacacttggatagaggtaaatcattttataaagtg 126
Query: 473 gaaaaaaatttgatagaaacttagaggaagagggcctggagtggatgtgagtgatgtgcc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gaaaaaaatttgatagaaacttagaggaagagggcctggagtggatgtgagtgatgtgcc 66
Query: 533 ccagtcattctctccctgactgacattcagatgcccaacaataaataaaatggtgacaac 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ccagtcattctctccctgactgacattcagatgcccaacaataaataaaatggtgacaac 6
Query: 593 atgtg 597
|||||
Sbjct: 5 atgtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
