BAC Information

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BAC

Clone NameMSMg01-453L22
Chromosome3 (Build37)
Map Location 40,003,391 - 40,156,499
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453L22.T7 (MSMg01no453_l22.b1)MSMg01-453L22.TJ (MSMg01no453_l22.g1)
ACCAG540685AG540686
length809797
length of high quality
(start - end)		540 (46 - 585)543 (77 - 619)
definitionCHROMAT_FILE: MSMg01no453_l22.b1 PHD_FILE: MSMg01no453_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:43 2005CHROMAT_FILE: MSMg01no453_l22.g1 PHD_FILE: MSMg01no453_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,003,391 - 40,003,926)(40,155,957 - 40,156,499)
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTTTATTTTTCGCATGGCCATGACACTTTGATTATAAAGGATG
ATCAACTTGAAGCTAAGATGTTTGTATTCATCCAATTTGATAAGCATTGC
AGAAAATACGAAATACCCTACAGGACCTGTATGTCTTCTTACTTAACAAA
AGATATGATTATATAAAGGTTTTGGCATGGAAACTACTCAGTAGGAGACA
GACAGGAGAGTCAACTTGCAAACAGAGATCAATGCTTTCAGGAAGGGGTA
AATAAGTTCTAAAAGGCAAGGACGATAAACAACTGCTTGAAGTTGGAAGA
GGTGTGGAAATTATTTCCCAATAGAAAATCTAGAAAGGACAGGTGAGAGG
GTGCACCACAGAAGGGGACAGCTTCTGGGACAGGCAGAGCCACAGAGCCG
CTGAGGCAGCACCCTTTTTGGGCCGCAGACAGCCGGCCACCCTCTGGGCC
AGATGACAGGTGTCCGCCTGGCTCTGAAGGCCTCTGCCTCAGGAGCAGCA
GGCACCATCTTGGTTCTGGGACTCCACCGAACTTAGGAACTTAGTCTGCA
CAGGTAAGAGTGTTCACAACAGAAGCTGACAGCTTCTGGGACCTGCCAAA
GCAACACAGCTTCTGGGAAAGGTCCTGTTTTGTGCCTTCTTCTTCGGCCA
GAAGGATGTCCAATCACAAGATATCTGTACACCTTTCCCTATAAAAGAGA
GCTTGCCAGCAAAGAGTGCTCTGAGCACTGTAACTCAAAGGAAAGAGCCT
GTCTTCCCN

CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCTCCTTTTGGCTTTTCTCGG
TATGTGTTTGCTGGCTTTGATTAGCAGACCCACAGAGCAATCTGAAATAA
ATTAGTACTGATGGATGGAAATCTTGGTGGTTTAAATATCATTATTAGTA
CACACAGAATGTCTGAAAGCCCACATTCTTCTCTTGGCTATGTCTCTTTG
TTCCTCATCTTTCCAAAGTTCTGTCAAATAAAACCCTAAGTAGCTTACGA
TTTGCATGTGATGTAGGAATAAGAAAGACTTAAATTCTTCAGACAAAAGG
ATCTTTTACTGACCTGCTTAAAGTTTAGGTATTGCTGGGTGAATGGATGG
ACATTGGAACAGATTAGATATCTAGGTTAAAATTAGATGTACTTATTGTT
CATCTTACTGTTAAATGGAAAAACATTACCTTCATATAATATTTGTAGTA
AATGGACAGATAAAGCAAGTTGTATTTAAATAATTTATAGATGGTACATG
GGTCATCTATCAGTCAAGTGGAAATACAGTTTCTTTTGACCTCATACATG
GCATCGCTCTCTTAATAATCGTTAGGAAAGGCCGAGACAATGAACATATA
TTTAGTGTGGTTGACACTAATCAAGTGGCGGTGCAGGNCAGACAGCACAC
CCTTAAACAGTGGGNCTTCTTTTCTCCTTTCTTTCTGNACTATTTTCTTT
GCCACTCTCCTCCCCATTCTCAGCTCTCCTGGATGCACANGATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_l22.b1 MSMg01no453_l22.b1 CHROMAT_FILE:
MSMg01no453_l22.b1 PHD_FILE: MSMg01no453_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:43 2005
         (540 letters)



>mm_chr3_40003187_40004126
          Length = 940

 Score = 1029 bits (532), Expect = 0.0
 Identities = 535/536 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtttatttttcgcatggccatgacactttgattataaaggatgatcaacttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtttatttttcgcatggccatgacactttgattataaaggatgatcaacttg 264

                                                                       
Query: 65  aagctaagatgtttgtattcatccaatttgataagcattgcagaaaatacgaaataccct 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagctaagatatttgtattcatccaatttgataagcattgcagaaaatacgaaataccct 324

                                                                       
Query: 125 acaggacctgtatgtcttcttacttaacaaaagatatgattatataaaggttttggcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaggacctgtatgtcttcttacttaacaaaagatatgattatataaaggttttggcatg 384

                                                                       
Query: 185 gaaactactcagtaggagacagacaggagagtcaacttgcaaacagagatcaatgctttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaactactcagtaggagacagacaggagagtcaacttgcaaacagagatcaatgctttc 444

                                                                       
Query: 245 aggaaggggtaaataagttctaaaaggcaaggacgataaacaactgcttgaagttggaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaaggggtaaataagttctaaaaggcaaggacgataaacaactgcttgaagttggaag 504

                                                                       
Query: 305 aggtgtggaaattatttcccaatagaaaatctagaaaggacaggtgagagggtgcaccac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggtgtggaaattatttcccaatagaaaatctagaaaggacaggtgagagggtgcaccac 564

                                                                       
Query: 365 agaaggggacagcttctgggacaggcagagccacagagccgctgaggcagcacccttttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaggggacagcttctgggacaggcagagccacagagccgctgaggcagcacccttttt 624

                                                                       
Query: 425 gggccgcagacagccggccaccctctgggccagatgacaggtgtccgcctggctctgaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggccgcagacagccggccaccctctgggccagatgacaggtgtccgcctggctctgaag 684

                                                                   
Query: 485 gcctctgcctcaggagcagcaggcaccatcttggttctgggactccaccgaactta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcctctgcctcaggagcagcaggcaccatcttggttctgggactccaccgaactta 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_l22.g1 MSMg01no453_l22.g1 CHROMAT_FILE:
MSMg01no453_l22.g1 PHD_FILE: MSMg01no453_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:43 2005
         (543 letters)



>mm_chr3_40155757_40156699
          Length = 943

 Score = 1027 bits (531), Expect = 0.0
 Identities = 540/543 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctccttttggcttttctcggtatgtgtttgctggctttgattagcagacccacaga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atttctccttttggcttttttcggtatgtgtttgctggctttgattagcagacccacaga 684

                                                                       
Query: 61  gcaatctgaaataaattagtactgatggatggaaatcttggtggtttaaatatcattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gcaatctgaaataaattagtactgatggatggaaatcttggtggtttaaatatcattatt 624

                                                                       
Query: 121 agtacacacagaatgtctgaaagcccacattcttctcttggctatgtctctttgttcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agtacacacagaatgtctgaaagcccacattcttctcttggctatgtctctttgttcctc 564

                                                                       
Query: 181 atctttccaaagttctgtcaaataaaaccctaagtagcttacgatttgcatgtgatgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atctttccaaagttctgtcaaataaaaccctaagtagcttacgatttgcatgtgatgtag 504

                                                                       
Query: 241 gaataagaaagacttaaattcttcagacaaaaggatcttttactgacctgcttaaagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaataagaaagacttaaattcttcagacaaaaggatcttttactgacctgcttaaagttt 444

                                                                       
Query: 301 aggtattgctgggtgaatggatggacattggaacagattagatatctaggttaaaattag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggtattgctgggtgaatggatggacattggaacagattagatatctaggttaaaattag 384

                                                                       
Query: 361 atgtacttattgttcatcttactgttaaatggaaaaacattaccttcatataatatttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgtacttattgttcatcttactgttaaatggaaaaacattaccttcatataatatttgt 324

                                                                       
Query: 421 agtaaatggacagataaagcaagttgtatttaaataatttatagatggtacatgggtcat 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtaaatggacagataaagcaggttgtatttaaataatttatagatggtacatgggtcat 264

                                                                       
Query: 481 ctatcagtcaagtggaaatacagtttcttttgacctcatacatggcatcgctctcttaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 ctatcagtcaagtggaaatacagtttcttttgacctcatacatggcatcactctcttaat 204

              
Query: 541 aat 543
           |||
Sbjct: 203 aat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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