Query= MSMg01no453_o10.b1 MSMg01no453_o10.b1 CHROMAT_FILE:
MSMg01no453_o10.b1 PHD_FILE: MSMg01no453_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:55 2005
(702 letters)
>mm_chr3_126259686_126260787
Length = 1102
Score = 1253 bits (648), Expect = 0.0
Identities = 687/702 (97%), Gaps = 4/702 (0%)
Strand = Plus / Plus
Query: 5 gaattctacccccagatcccat----ggggaggggaaggaaacccagttattgtgatgga 60
||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 201 gaattctaccctcagatcccatgggggggggggggaaggaaacccagttattgtgatgga 260
Query: 61 ttcagagacaagtggtcactggaagttatgttcaatgagagatcttgtatcaaaaatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagagacaagtggtcactggaagttatgttcaatgagagatcttgtatcaaaaatata 320
Query: 121 gttgagggtccctgaataaaagacgcctgacactgtgctctggccatgcctacacatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgagggtccctgaataaaagacgcctgacactgtgctctggccatgcctacacatatg 380
Query: 181 tagttactcacatatacacgaacatctgaacacacacaaacaacaacaaaaaaattgcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttactcacatatacacgaacatctgaacacacacaaacaacaacaaaaaaattgcta 440
Query: 241 taacaggcatagtggcacattacaataatggtagcactcaagagccagaggcaggagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacaggcatagtggcacattacaataatggtagcactcaagagccagaggcaggagaaa 500
Query: 301 tcaccacaaatgtagaacaatgtcaggctgcatatcaagttccaggatagtcagggctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaccacaaatgtagaacaatgtcaggctgcatatcaagttccaggatagtcagggctac 560
Query: 361 catagccagtctctatcacaaaaataaaatcaaccggtcaaacgacaacagcaacaaaca 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catagccaggctctatcacaaaaataaaatcaaccggtcaaacgacaacagcaacaaaca 620
Query: 421 aacaaagctataatttaccaggcaagagatagctttcctttgggggccaacaaagccctg 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 aacaaagctataatttaccaggcaagagatagctttcctttgagggccaacaaagccctg 680
Query: 481 ctgcaagtctgaagaactgtaatgcttcctatgcctcacacttaaagttggtatgttaca 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgcaagtctgaaggactgtaatgcttcctatgcctcacacttaaagttggtatgttaca 740
Query: 541 gtggacttgggagacagagtccaaaaccaatcataagcaaggtgactaaccgtgacttta 600
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 gtggacttgggagatagagtccaaaaccaatcataagcaaggtgactaaccttgacttta 800
Query: 601 taactctgtcgctacctaacacgcatgttccaagtaataaaattaaaaacaaatatcctg 660
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagctctgtagcaacctaacacgcatgttccaagtaataaaattaaaaacaaatatcctg 860
Query: 661 tgaaatgaaaactacccaaatgttcataaattcatataaggg 702
||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 861 tgaaatgaaaactacacaaatgttcataaattcatataaggg 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no453_o10.g1 MSMg01no453_o10.g1 CHROMAT_FILE:
MSMg01no453_o10.g1 PHD_FILE: MSMg01no453_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:55 2005
(633 letters)
>mm_chr3_126413138_126414168
Length = 1031
Score = 1050 bits (543), Expect = 0.0
Identities = 611/635 (96%), Gaps = 6/635 (0%)
Strand = Plus / Minus
Query: 1 aaagagggagaccaggaggaaatgcagagaacaagctggggcggggaggggaggttgtct 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 831 aaagagggagaccaggaggaaatgcagagaacaagctggggtggggaggggaggttgtct 772
Query: 61 ctgagaaaacaagacatgaattagatggagaaggtgtgagccaaaactgagtgtgaccag 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 771 ctgagaaaacaagacatgaattagatgg---aggtgtgagccaaaactgagtgtgaccag 715
Query: 121 cctaggcagaaagcaagccctctccagcagagtccacagcagatgagctcggaggcatgc 180
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cctaagcagaaagcaagcgctctccagcagagtccacagcagatgagctcggaggcatgc 655
Query: 181 ttttgtggaaggatacccatagtgcttttgtgggggccatcactaagggctttgg-tttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 654 ttttgtggaaggatacccatagtgcttttgtgggggccatcactaagggctttggttttt 595
Query: 240 ttcctggagtaaatgggaattgacaatagggttatggggaggagaggatgtattttacct 299
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 594 ttcctggagttaatgggaattgacaatagggttatggggaggagatgatgtattttacct 535
Query: 300 ctttaaaaaacaaacatggtaggaagatacatggtgaagaagccgagacacctgtacatt 359
|||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct: 534 ctttaagaaacaaacatggtaggaagatacacggtgaagaagccaagacacctgtaaatt 475
Query: 360 tc-ggatgacagtaagtttcaagaaaggtagaaacactgagtgtggtgtccatgcatgtt 418
|| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 474 tcgggatgacagtacgtttcaagaaaggtagaaacaccgagtgtggtgtccatgcatgtt 415
Query: 419 ggacctgacaaggggtgtgaagtgagggaattaagaaagacaaccacaaacagaagctgc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ggacctgacaaggggtgtgaagtgagggaattaagaaagacaaccacaaacagaagctgc 355
Query: 479 tgggatcagatagcttgggctcgcagctggtaaaaacccagcatccaagcatcccagtat 538
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 354 tgggatcagatagtttgggctcgcagctggtgaaaacccagcatccaagcatcccagtat 295
Query: 539 ttttactctatagaacataaagttgagttactatacaaagctagataaagcagcagaaaa 598
||||||||||||||||| | ||||||||||||||||||||||| | |||||||| |||||
Sbjct: 294 ttttactctatagaacagacagttgagttactatacaaagcta-acaaagcagccgaaaa 236
Query: 599 atatggaggcatggcttgtggcccagagctggctc 633
|||||||||||||||||| ||||||||||||||||
Sbjct: 235 atatggaggcatggcttggggcccagagctggctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1031
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1021
Effective search space: 636083
Effective search space used: 636083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
