Query= MSMg01no453_p03.b1 MSMg01no453_p03.b1 CHROMAT_FILE:
MSMg01no453_p03.b1 PHD_FILE: MSMg01no453_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:59 2005
(701 letters)
>mm_chr3_129413619_129414719
Length = 1101
Score = 1286 bits (665), Expect = 0.0
Identities = 689/697 (98%)
Strand = Plus / Plus
Query: 5 gaattctgtctctgtagtctggttaaatgtggacatgtgtaagcacattcaggatttaac 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtctctgtagtctggttaaatgtggacatgtgtaagcacattcaggatttaat 264
Query: 65 attcgtcagcactcggtcaaggaagtcagaggctagagagatggcccagctgtcatgagc 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttgtcagcactcggtcaaggaagtcagaggctagagagatggcccagctgtcatgagc 324
Query: 125 aagaactgctcttgcagtgaacccatgtttggcttccaacacccccatccaccagcttac 184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaactgctcttgcagagaacccatgtttggcttccaacacccccatccaccagcttac 384
Query: 185 aatggcctgaaactccagcgccagaggacctgacacactctctgggcattgtggctacat 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 aatggcctgaaactccagcgccagaggacctgacacaatctctgggcattgtggctacat 444
Query: 245 gtacccatatgcatatattcccaaacacatacatatgtgcacacgatttaaaaaataata 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 gtacccatatgcatatattcccaaacacatacatatgtgcacacgatttaagaaataata 504
Query: 305 gtacgactaaactagagatgaaaaaagtcatgcagcctgaagcctcacctacgtcgttct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtacgactaaactagagatgaaaaaagtcatgcagcctgaagcctcacctacgtcgttct 564
Query: 365 ggataagtcttcggcgtttggagccatccagattggccatttcaatcacagacctcttgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggataagtcttcggcgtttggagccatccagattggccatttcaatcacagacctcttgg 624
Query: 425 tgtcacaccagtacaaagtgtctgttaagtagtcaatcgtgattccactcggttccagta 484
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 tgtcacaccagtacaaagtgtctgttaagtagtcaatcgtgattccactgggttccagta 684
Query: 485 gattggagctggctatcagcacccggtcggaaccttgaagggaagcgctttcaatccgtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gattggagctggctatcagcacccggtcggaaccttgaagggaagcgctttcaatccgtg 744
Query: 545 gagacatccctacgtccgtccagaacagtctccttcagtcaagaaaactcacatgtcaaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gagacatccctacgtccgtccagaacagtctccttcagtcaagaaaactcacatgtcaaa 804
Query: 605 tttgcatgaaaatattcttatattctttcaagtcatagaaatccaatagaaatcacttta 664
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 805 tttgcatgaaaaaattcttatattctttcaagacatagaaatccaatagaaatcacttta 864
Query: 665 aagagtggtacaccaagaaatatgtaaggagaaaatg 701
|||||||||||||||||||||||||||||||||||||
Sbjct: 865 aagagtggtacaccaagaaatatgtaaggagaaaatg 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_p03.g1 MSMg01no453_p03.g1 CHROMAT_FILE:
MSMg01no453_p03.g1 PHD_FILE: MSMg01no453_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:59 2005
(556 letters)
>mm_chr3_129584714_129585669
Length = 956
Score = 880 bits (455), Expect = 0.0
Identities = 534/575 (92%), Gaps = 29/575 (5%)
Strand = Plus / Minus
Query: 1 taaaaacacttcagaacctactttcttctatttttcaacagaaatgaaaatcgtgtctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 taaaaacacttcagaacctactttcttctatttttcaacagaaatgaaaatcgtgtctca 782
Query: 61 cttccgttcctttgagatcagggaggaaggaagcgaagctggcccaggtgagtaatgatg 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cttcctttcctttgagatcagggaggaaggaagcgaagctggcccaggtgagtaatgatg 722
Query: 121 acggttatgccacgataacctgagttcaaatccctagcacccagataaagagctgaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acggttatgccacgataacctgagttcaaatccctagcacccagataaagagctgaggaa 662
Query: 181 gatgagtgtgtgcttataaccccagtgttat---aagcaagagagacaggcagatcccag 237
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 661 gatgagtgtgtgcttataaccccagtgt--tgggaggcaagagagacaggcagatcccag 604
Query: 238 gagctcagtggccagccagatcagtgagctttcgctttcttaagggagtaatatagagaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gagctcagtggccagccagatcagtgagctttcgctttcttaagggagtaatatagagaa 544
Query: 298 cagaagaaaaagtcactcagcattctctcttggcctctgtatgtgtacatatgggcccat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cagaagaaaaagtcactcagcattctctcttggcctctgtatgtgtacatatgggcccat 484
Query: 358 caaccaa------acacccacatgcacgcctctctcaccagacagacagacagac----- 406
||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 483 caaccaaacacccacacccacatgcatgcctctctcaccagacagacagacagacagaga 424
Query: 407 -agacagacagacagacagacagacagagctggctaaatggcaaaatgtgccattt---- 461
||| ||| ||| ||| ||| ||| ||||||||||||||| |||| || |
Sbjct: 423 gagagagagagagagagagagagagagagctggctaaatgccaaa------ca--taaaa 372
Query: 462 tgtgttcccataaaaatttctggaagccaggcagtggtggtgcacgcctttagtcctagc 521
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 371 tgtgttcccataaaaatttctggaagccaggcagtggtggcgcatgcctttagtcctagc 312
Query: 522 acttgggaggcagaggcaggtggatttctgagtta 556
|||||||||||||||||||||||||||||||||||
Sbjct: 311 acttgggaggcagaggcaggtggatttctgagtta 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
