Query= MSMg01no454_g19.b1 MSMg01no454_g19.b1 CHROMAT_FILE:
MSMg01no454_g19.b1 PHD_FILE: MSMg01no454_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:36 2005
(575 letters)
>mm_chr3_132945046_132946020
Length = 975
Score = 909 bits (470), Expect = 0.0
Identities = 485/490 (98%)
Strand = Plus / Minus
Query: 70 ttaacaccccttcccctgcacacacccccattcacatgctgactttccccataacatgtg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 ttaacaccccttcccctgcacacacccccattcacatgctgactttccccataacatgtg 916
Query: 130 ctccacagatgcgtctactggaggaaccaaagctgacagcagctcaagaattttgcctgg 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ctccacagatgcgtctactggaggaaccaaagctgacagcagctcaagaattttgcctgg 856
Query: 190 atctggtgctccacagctataagagcacttgggaaatgcaatcatgagggttattagttt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 855 atctggtgctccacagctataagagcacttgggaaatgcaatcatgagggttaggagttc 796
Query: 250 taggtcatccttgggaatggggaatttgaaggtagcctgaactacatgagacactgtctc 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aaggtcatccttgggaatggggaatttgaaggtagcctgaactacatgagacactgtctc 736
Query: 310 aaaaaagggaaaagaaaaacaagcaaactgcgggacttactcatatttttaggagcagaa 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaaaaagggaaaagaaaaacaagcaaactgcgggacttactcatatttttaggagcagaa 676
Query: 370 tagagcaaggatgtcatttctctcttttttcttcaaattttcataggtggcatgctaagc 429
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 675 tagagcaaggatgtcatttctctcttttttcttcaaattttgataggtggcatgctaagc 616
Query: 430 agaaaaaggaaatagaaaattatagacatggaaagtttttaaaaaatgttattacagaca 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agaaaaaggaaatagaaaattatagacatggaaagtttttaaaaaatgttattacagaca 556
Query: 490 aattgactgtaaacataaggtcctaaagaatctcaaataaataaataaataaataaataa 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aattgactgtaaacataaggtcctaaagaatctcaaataaataaataaataaataaataa 496
Query: 550 ataaataaat 559
||||||||||
Sbjct: 495 ataaataaat 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_g19.g1 MSMg01no454_g19.g1 CHROMAT_FILE:
MSMg01no454_g19.g1 PHD_FILE: MSMg01no454_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:36 2005
(410 letters)
>mm_chr3_132767796_132768608
Length = 813
Score = 690 bits (357), Expect = 0.0
Identities = 395/409 (96%), Gaps = 3/409 (0%)
Strand = Plus / Plus
Query: 5 ttgaggttccctgttcccaagtgactgcaggttgtgtcaaattgacaataaccagcacag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttgaggttccctgttcccaagtgactgcaggttgtgtcaaattgacaataaccagcacag 264
Query: 65 cgattacgtttcacttttatattattgaggtacaggcggtcaaagccaggtccttgcata 124
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caattatgtttcacttttatattattgaggtacaggcggtcaaagccaggtccttgcata 324
Query: 125 tgctaggtaacagtaattatatcgtcagctcctaac---atgagctcctagcttaagctc 181
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 325 tgctaggtaacagtaattatatcgtcagcacctaacattatgagctcctagcttaagctc 384
Query: 182 ttacataactacaattcgtcctcataaacacacaggtgaagggagggaggcatgtgtgtt 241
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacataactacaatccgtcctcataaacacacaggtgaagggagggaggcatgtgtgtt 444
Query: 242 gtttctgaagtaacagctggggaggaatgagcaggggtcagccctgggtctgtttgatac 301
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 gcacctgaggtaacagctggggaggaatgagcaggggtcagccctgggtctctttgatac 504
Query: 302 taaacactgtttcagtctttctctgtactgctacatagctagggctgtcctgcagtaaac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaacactgtttcagtctttctctgtactgctacatagctagggctgtcctgcagtaaac 564
Query: 362 actcagaatctgaaaaaggatccacgtttatagggagactttggtagta 410
||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 565 actcagaatctgaaagaggatccacgtttatagggagacttgggtagta 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 813
Length adjustment: 9
Effective length of query: 401
Effective length of database: 804
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|