BAC Information

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BAC

Clone NameMSMg01-454G19
Chromosome3 (Build37)
Map Location 132,768,000 - 132,946,020
singlet/doubletdoublet
Overlap geneInts12, 9130221D24Rik
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd
Downstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454G19.T7 (MSMg01no454_g19.b1)MSMg01-454G19.TJ (MSMg01no454_g19.g1)
ACCAG541204AG541205
length748767
length of high quality
(start - end)
575 (73 - 647)410 (78 - 487)
definitionCHROMAT_FILE: MSMg01no454_g19.b1 PHD_FILE: MSMg01no454_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:36 2005CHROMAT_FILE: MSMg01no454_g19.g1 PHD_FILE: MSMg01no454_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,945,531 - 132,946,020)(132,768,000 - 132,768,408)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAATCCGCG
GAATTCACTTTGTAGCACAAAATAGTCTCAAACTCACAGAGATCAGCCTG
CCTCTGCCTCCCAAGTGCTGGGATTAAAGTGTGCACTACCTTTAACACCC
CTTCCCCTGCACACACCCCCATTCACATGCTGACTTTCCCCATAACATGT
GCTCCACAGATGCGTCTACTGGAGGAACCAAAGCTGACAGCAGCTCAAGA
ATTTTGCCTGGATCTGGTGCTCCACAGCTATAAGAGCACTTGGGAAATGC
AATCATGAGGGTTATTAGTTTTAGGTCATCCTTGGGAATGGGGAATTTGA
AGGTAGCCTGAACTACATGAGACACTGTCTCAAAAAAGGGAAAAGAAAAA
CAAGCAAACTGCGGGACTTACTCATATTTTTAGGAGCAGAATAGAGCAAG
GATGTCATTTCTCTCTTTTTTCTTCAAATTTTCATAGGTGGCATGCTAAG
CAGAAAAAGGAAATAGAAAATTATAGACATGGAAAGTTTTTAAAAAATGT
TATTACAGACAAATTGACTGTAAACATAAGGTCCTAAAGAATCTCAAATA
AATAAATAAATAAATAAATAAATAAATAAATTAATAAATAAATAAATCTC
ACTTTAATAAAGGACCTAAATCAAAATTGGTGGACAAAATAATTTACATT
TCTATATTGACAACAAAACATTGAAAAATAAGTAATTCCATTACCAAA
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAATTGAGGTTCCCTGTTCCCA
AGTGACTGCAGGTTGTGTCAAATTGACAATAACCAGCACAGCGATTACGT
TTCACTTTTATATTATTGAGGTACAGGCGGTCAAAGCCAGGTCCTTGCAT
ATGCTAGGTAACAGTAATTATATCGTCAGCTCCTAACATGAGCTCCTAGC
TTAAGCTCTTACATAACTACAATTCGTCCTCATAAACACACAGGTGAAGG
GAGGGAGGCATGTGTGTTGTTTCTGAAGTAACAGCTGGGGAGGAATGAGC
AGGGGTCAGCCCTGGGTCTGTTTGATACTAAACACTGTTTCAGTCTTTCT
CTGTACTGCTACATAGCTAGGGCTGTCCTGCAGTAAACACTCAGAATCTG
AAAAAGGATCCACGTTTATAGGGAGACTTTGGTAGTATTCATGTTGTCAT
AAAATAAAGTCAGTTATTGGTCACAATAAAAATGCTTAGGAGGAATAAAT
AAAATTCTTACTGAATAACATGGAAATTATATTTATAAACTTTTTTTAAG
GATTTGATTCCCTTGGAGGAAAAACCTCCCAAAGGGGGTATTTATTCCTG
AATAAAATCTCCCCCTTGGAATTAAGGGTTTACAACCATTGCGAATTACC
ACAGGGGGGGTTTAACTCAACCCCCCCCGAACTTTAAAAATCCTTCCCCT
GGATCCCCAAAAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_g19.b1 MSMg01no454_g19.b1 CHROMAT_FILE:
MSMg01no454_g19.b1 PHD_FILE: MSMg01no454_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:36 2005
         (575 letters)



>mm_chr3_132945046_132946020
          Length = 975

 Score =  909 bits (470), Expect = 0.0
 Identities = 485/490 (98%)
 Strand = Plus / Minus

                                                                       
Query: 70  ttaacaccccttcccctgcacacacccccattcacatgctgactttccccataacatgtg 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 ttaacaccccttcccctgcacacacccccattcacatgctgactttccccataacatgtg 916

                                                                       
Query: 130 ctccacagatgcgtctactggaggaaccaaagctgacagcagctcaagaattttgcctgg 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ctccacagatgcgtctactggaggaaccaaagctgacagcagctcaagaattttgcctgg 856

                                                                       
Query: 190 atctggtgctccacagctataagagcacttgggaaatgcaatcatgagggttattagttt 249
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| 
Sbjct: 855 atctggtgctccacagctataagagcacttgggaaatgcaatcatgagggttaggagttc 796

                                                                       
Query: 250 taggtcatccttgggaatggggaatttgaaggtagcctgaactacatgagacactgtctc 309
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aaggtcatccttgggaatggggaatttgaaggtagcctgaactacatgagacactgtctc 736

                                                                       
Query: 310 aaaaaagggaaaagaaaaacaagcaaactgcgggacttactcatatttttaggagcagaa 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaaaaagggaaaagaaaaacaagcaaactgcgggacttactcatatttttaggagcagaa 676

                                                                       
Query: 370 tagagcaaggatgtcatttctctcttttttcttcaaattttcataggtggcatgctaagc 429
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 675 tagagcaaggatgtcatttctctcttttttcttcaaattttgataggtggcatgctaagc 616

                                                                       
Query: 430 agaaaaaggaaatagaaaattatagacatggaaagtttttaaaaaatgttattacagaca 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agaaaaaggaaatagaaaattatagacatggaaagtttttaaaaaatgttattacagaca 556

                                                                       
Query: 490 aattgactgtaaacataaggtcctaaagaatctcaaataaataaataaataaataaataa 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aattgactgtaaacataaggtcctaaagaatctcaaataaataaataaataaataaataa 496

                     
Query: 550 ataaataaat 559
           ||||||||||
Sbjct: 495 ataaataaat 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no454_g19.g1 MSMg01no454_g19.g1 CHROMAT_FILE:
MSMg01no454_g19.g1 PHD_FILE: MSMg01no454_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:36 2005
         (410 letters)



>mm_chr3_132767796_132768608
          Length = 813

 Score =  690 bits (357), Expect = 0.0
 Identities = 395/409 (96%), Gaps = 3/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ttgaggttccctgttcccaagtgactgcaggttgtgtcaaattgacaataaccagcacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttgaggttccctgttcccaagtgactgcaggttgtgtcaaattgacaataaccagcacag 264

                                                                       
Query: 65  cgattacgtttcacttttatattattgaggtacaggcggtcaaagccaggtccttgcata 124
           | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caattatgtttcacttttatattattgaggtacaggcggtcaaagccaggtccttgcata 324

                                                                       
Query: 125 tgctaggtaacagtaattatatcgtcagctcctaac---atgagctcctagcttaagctc 181
           ||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||
Sbjct: 325 tgctaggtaacagtaattatatcgtcagcacctaacattatgagctcctagcttaagctc 384

                                                                       
Query: 182 ttacataactacaattcgtcctcataaacacacaggtgaagggagggaggcatgtgtgtt 241
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacataactacaatccgtcctcataaacacacaggtgaagggagggaggcatgtgtgtt 444

                                                                       
Query: 242 gtttctgaagtaacagctggggaggaatgagcaggggtcagccctgggtctgtttgatac 301
           |   |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 gcacctgaggtaacagctggggaggaatgagcaggggtcagccctgggtctctttgatac 504

                                                                       
Query: 302 taaacactgtttcagtctttctctgtactgctacatagctagggctgtcctgcagtaaac 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaacactgtttcagtctttctctgtactgctacatagctagggctgtcctgcagtaaac 564

                                                            
Query: 362 actcagaatctgaaaaaggatccacgtttatagggagactttggtagta 410
           ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 565 actcagaatctgaaagaggatccacgtttatagggagacttgggtagta 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 813
Length adjustment: 9
Effective length of query: 401
Effective length of database: 804
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)