Query= MSMg01no454_o20.b1 MSMg01no454_o20.b1 CHROMAT_FILE:
MSMg01no454_o20.b1 PHD_FILE: MSMg01no454_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:16 2005
(463 letters)
>mm_chr3_76599402_76600266
Length = 865
Score = 845 bits (437), Expect = 0.0
Identities = 455/461 (98%), Gaps = 2/461 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgctttcca-atactagctcgggatagtagtccaactttctattagagtattt 63
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgctggcgagatactagctcgggatagtagtccaactttctattagagtattt 264
Query: 64 gtcatcctaccaaaaattaattttaagttctcgagttaaaaattccctgataatgtgtga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcatcctaccaaaaattaattttaagttctcgagttaaaaattccctgataatgtgtga 324
Query: 124 acattcaggtacagctttttagatctcaatatggagctgcaaactttatctttgccttat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acattcaggtacagctttttagatctcaatatggagctgcaaactttatctttgccttat 384
Query: 184 caaacaaagcatat-aaaaaaaatacaaaaatctttctacgatttgccttccaggtctta 242
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 caaacaaagcatataaaaaaaaatacaaaaatctttctaagatttgccttccaggtctta 444
Query: 243 acactatatttgaagaactggcaaaccaaataaaaacctagtgaatcatcacagccgtgt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acactatatttgaagaactggcaaaccaaataaaaacctagtgaatcatcacagccgtgt 504
Query: 303 cttaaaagtgtccctcaaaaggcctgcactggaatcataattcacaacctgtaataggtt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttaaaagtgtccctcaaaaggcctgcactggaatcataattcacaacctgtaataggtt 564
Query: 363 taatgagcaagtatacaagaaggccgattcaatatgaggcagaaaaggagagtcagtcac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taatgagcaagtatacaagaaggccgattcaatatgaggcagaaaaggagagtcagtcac 624
Query: 423 atatgacggggtcactggaaagttaactctaggacacagta 463
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atatgacggggtcactggaaagttaactctaggacacagta 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 865
Length adjustment: 10
Effective length of query: 453
Effective length of database: 855
Effective search space: 387315
Effective search space used: 387315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_o20.g1 MSMg01no454_o20.g1 CHROMAT_FILE:
MSMg01no454_o20.g1 PHD_FILE: MSMg01no454_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:17 2005
(395 letters)
>mm_chr3_76757084_76757878
Length = 795
Score = 741 bits (383), Expect = 0.0
Identities = 392/395 (99%)
Strand = Plus / Minus
Query: 1 ataaaggttgagacttatccttaccagagacaaccaaagcagaaagaaaaaaggaaagta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 595 ataaaggttgagacttatccttaccagagacaaccaaagcagaaagaaaaaaggaaagga 536
Query: 61 agaagaaaattttgtcagtgtttgaaagtaaacatgaccatttaaaactatccccatagt 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agaagaaaattctgtcagtgtttgaaagtaaacatgaccatttaaaactatccccatagt 476
Query: 121 tagaatcactcctaaattgctatgttcataatatgtttgaatctgttctaattcgtgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tagaatcactcctaaattgctatgttcataatatgtttgaatctgttctaattcgtgtat 416
Query: 181 ttctggatctctgatgtgcctactactctaatcactgtaagtaaggaaatggaagctgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttctggatctctgatgtgcctactactctaatcactgtaagtaaggaaatggaagctgaa 356
Query: 241 gtaattaactaatatcagagaagtgttatatttgtcgtaagcaatgtgatactaagcacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtaattaactaatatcagagaagtgttatatttgtcgtaagcaatgtgatactaagcacg 296
Query: 301 gcaatgagacctatggaaaaagtctcagtttaatcaaaggtgccttgttatgtgcagtgc 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 295 gcaatgagacctatggaaaaagtctcagtttaatcaaagatgccttgttatgtgcagtgc 236
Query: 361 cagaaatcataagaggtgttaggtaaacaagcaga 395
|||||||||||||||||||||||||||||||||||
Sbjct: 235 cagaaatcataagaggtgttaggtaaacaagcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
