BAC Information

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BAC

Clone NameMSMg01-456B22
Chromosome3 (Build37)
Map Location 143,464,787 - 143,465,017
singlet/doubletsinglet
Overlap genenone
Upstream genePkn2, LOC100040053, LOC100039883, 1700001N15Rik, EG668889, EG621809
Downstream geneLOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456B22.T7 (MSMg01no456_b22.b1)MSMg01-456B22.TJ (MSMg01no456_b22.g1)
ACCAG542497AG542498
length7321,112
length of high quality
(start - end)
234 (319 - 552)---
definitionCHROMAT_FILE: MSMg01no456_b22.b1 PHD_FILE: MSMg01no456_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:49 2005CHROMAT_FILE: MSMg01no456_b22.g1 PHD_FILE: MSMg01no456_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAACAAGAGCGCGGAA
TTCCAGACATACCAATTACTAACTTTGAATTTCATTCATGGTTTCCAACA
TGGTCCAATTCATAGAGAACTTGTCACCTACCCCTACATTGATAGCTCTG
AACATTGGCAGGGCCAGTCTCTCTTACTCTGCCATGACAATCAGTGTGAT
AGTGTCTCTGAACGTGTATACTCACTTCTCATTAAATGTTGAGTGTCCAC
AACACGCTAAGTGTTATTTAAACCTATACGCTTTAAATTACTTATTAATG
AGTGTAGAAATATATTCTAAAAGAATCAGCAGGCTGTACAAGAGAGAATC
CCAAACTATAATAAAAATGTAGGGTAAAAAGGCCAGGTAAACAAACTGAA
CCATCAAGACTTGATACAATTAGATGTGATAGATATGAAGGCTATACATT
CATTTGACTGGGCCACAGGATACACAGATATCCTGATTAAAGTTATTTCT
GGGTATATCTATGAAATTCTTTCTGGAAGTGATAAATATTTGAACTAGCA
AACTGAGCAAAATATATTGGTCTACCTTACTTTGATACATATAGCAGAGA
ATGCCATTGTTTGATGCCCTGGGGATGTGAAAAGATATTGTGGCCTTGTA
AGAAAGCACATGCGGTAAAGGCACTTGTCATGCCAACCTGACAAGCTTAT
TCTTATCTGCTTACCCTCCCCCAAAGCTCAAG
GGGGGGTGGGTCGGGGGGGGGGGGGGGGGGGGGGGGACTCCCGATGGGGG
GGGGGGGGCAAGGTGATGAATCCCGGGGTAGGTAAGGGAGGGGGGGGGGG
GGGCGGGTTCCTTGGGGCGGGGGCGGCTCTATTACACCTGTCTGCCCCCC
TTCTCTCGCCCCCCCCCGTTTCATTCCCGCTGTTCTCGTCGCCGTAAGCA
TCACATCGGTCCTTAACCTTTCTGATATTTCCGTCCTCTTCTCTCAGAGT
AATCGCCTTTGCCCCGTCCGCGGACGGCGGTGTTCCGCGGTTGCGGGGGG
TGGGAGAGGGGGGGATGGAGAAAAGGGAGAGAGCTCATGTAAGGAAGGGG
TAGCGTTCCTGACGGGTCAGCCCTCGTTCCGCGGAATAGACAGGGGTTGG
CCGTGGGGGGGGGTGCGCGGGGGGGTAGGCGAGAGGGGCGAGATACACAC
GTAATACTACGATGACTTTGGTCGCTGGGAGGCATCGATGGTATAAAGCG
ATATGCGTTAGAGACGAAGGTGGAGTAGTCCGCGGTTTGACGGAGGGGTG
GTATACGGTGGGTTGTATCGGCGCGGGTAGTTGGTGGGTGACGCACGTTC
CCCGGCGCGCTAGTTTGCACGAGTTGTTGTGCTCACGAGGCGGTAGGAGC
GAGGTAGTGATTGATGACGGTGGCGTTGGGTGTCACGCGCGCCGGCGGCG
CAGTGAGCTTTTGAGTCGAAGGCGTTGCGCGGAGGTATAGATCTCTGAGC
GTGTGATCGGGAGTGACGTTTTTCTCGTGACGGCACAACACTTGAGATTT
ACGCGCGGATAGAGCTGTTTTGAGCGGGCGGTGATGAGTGGGTGTGGCCG
CCCGATGTTGCGTCTGCGACTGACAGGTTGAGTTGCACGTTCCTTGTGTG
TTGCGCGTGGAGAACGGATACGTTCGGTAAGTTATAATATCAATTATCTA
CGGGTGTATGTCTACGATCACGCGCCGCAGTCTTATTGTATTATGGGCGG
GGTGGTGTGTAGTGGCCCAATCTTGTGGTGTTCTAGTGTACGCTCGGTAG
TGGTGCGGTGGATGTGTGTGTGTGGTGGCCGAGCATTGACATCGCTATGC
GATATGGTAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_b22.b1 MSMg01no456_b22.b1 CHROMAT_FILE:
MSMg01no456_b22.b1 PHD_FILE: MSMg01no456_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:49 2005
         (234 letters)



>mm_chr3_143464587_143465221
          Length = 635

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%), Gaps = 1/231 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagaatcagcaggctgtacaagagagaatcccaaactataataaaaatgtagggtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagaatcagcaggctgtacaagagagaatcccaaactataataaaaatgtagggtaaa 260

                                                                       
Query: 61  aaggccaggtaaacaaactgaacc-atcaagacttgatacaattagatgtgatagatatg 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggccaggtaaacaaactgaacccatcaagacttgatacaattagatgtgatagatatg 320

                                                                       
Query: 120 aaggctatacattcatttgactgggccacaggatacacagatatcctgattaaagttatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggctatacattcatttgactgggccacaggatacacagatatcctgattaaagttatt 380

                                                              
Query: 180 tctgggtatatctatgaaattctttctggaagtgataaatatttgaactag 230
           |||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tctgggtataactatgaaattctttctggaagtgatgaatatttgaactag 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space:   140850
Effective search space used:   140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)