BAC Information

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BAC

Clone NameMSMg01-456C07
Chromosome3 (Build37)
Map Location 17,505,373 - 17,505,551
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456C07.T7 (MSMg01no456_c07.b1)MSMg01-456C07.TJ (MSMg01no456_c07.g1)
ACCAG542515AG542516
length870778
length of high quality
(start - end)
194 (73 - 266)247 (72 - 318)
definitionCHROMAT_FILE: MSMg01no456_c07.b1 PHD_FILE: MSMg01no456_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:51 2005CHROMAT_FILE: MSMg01no456_c07.g1 PHD_FILE: MSMg01no456_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXATACAAGAGAGGATCCG
CGGAATTCTAAGTGTCCAAGATAGCCACTGTAGATTACTGGCCTTTTTCT
CTTAGAATATACAATAGAGTTAATGCTTTAAGAAATGTAAGGATTTGGAA
ATAGTCTCAGTTGGGAAGAACATTTGTTCTTCAAGCACAAAGATCTGAGT
TTGAATCCCCACAAGCTTAAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGNAAAAANAGNAAATTAAAGGTTTTGTTTTATTGGGG
TGGGGTGGGGAGATGTTTTTTTTGTTGTTGGCAGTGCCCGATGTTGTTTC
GTGTTCGGGCGTTTTTTGTTCTCTCCCCTATTATTAACGCGGGATTTACA
TTACTTTGACGTTTTTCTCTTTGTACGGTTTTCCCCCCCCTGAGGTTTTC
CTCCCTGCTTTCTCCTTTCTTTTCCCTATAGCACCTTTTTCTTATCACTT
TCCTTTTCACATTCTTTTTTTATTCTCCATTCACTTTGTACCCTCTCCGT
TCACCTCTCATTCCTTAATGTCCCCTTACCCTATCCCTTTGCCCTCTTTT
ATTACCCATTGTATTTTCTGCGATCCTTCTCCAGCTTCCTCGCTCTTCCT
CCTCCCGTTTTATCGCCTTTAGTTTTACTTTATTAATAGCCGTGCCACTA
TTTGTTATATTCAGTTATCTTTTCCATGCCCTCTATTATTCCCCATATAT
CTTTTACCCACAATTATCTCTACTATTCATCCTCCTTTCCATTTCACCCT
TCACCTTTACATCTCTGTTTTATTTGTATTTTGATTGCGCGGTGCTAATA
CTTTTTATTCTATCACGTCN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCGGAATCACTCTTGCACCTGCATACAAGGCTTGTT
TACTAGTTAGGCACAGTGGAGGCCCGCGCCATCTTATAATGGCGATTGCT
CGCGGCACACACGGCTCTCCTCAGAGATTACTGGCAGCACGCATGCAATT
GCTCGCAGCACGTACCGGCTCTCCACAATCCATGAAGATGTCAGTAGATG
ATGAGTGGAATTCAAGGAGCAAAAAACTCTGATTCCATCTGCTTTGTTTC
TAAAATAGTACAAAGGACTTCTTCTATTAACCAATTAGATTAGAAAACAC
AGGTGGCATACTATGAGGAAGGAGCACAGTTGATAGGTAACCCCTTGCTA
ATTCTATCACAGAATATGCGCCTTATGGCCATTCAAAAGCATTCCTGTCT
CCCATGTGAAATATAAACATCTCCACATTATTCTCATTCTTGGAAGGTTG
CTTCTAACTGGTATTTATCAATAATTAGAGCCTATGATCCCCACCTTTAT
TCTTTACTTGGTATGAATTATACCCATTCTTTGATTTGCAATCTGTCGTT
CCCAACTGTGCCTTGGTTTTTTTCTATTTTGCCTATATCACCCCCAATGC
GTTGTCAATTTTTTTTTTTCCTTTATTACCAATTGATTTATCCCTCCATC
TTTTATTATTTCTTGACCTCATCTTCTCTTTCAACCCACATTTATTATTC
ACCACTTTATATCCTTGTGCCTCTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_c07.b1 MSMg01no456_c07.b1 CHROMAT_FILE:
MSMg01no456_c07.b1 PHD_FILE: MSMg01no456_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:51 2005
         (194 letters)



>mm_chr3_17505201_17505794
          Length = 594

 Score =  346 bits (179), Expect = e-100
 Identities = 179/179 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccactgtagattactggcctttttctcttagaatatacaatagagttaatgctttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agccactgtagattactggcctttttctcttagaatatacaatagagttaatgctttaag 292

                                                                       
Query: 61  aaatgtaaggatttggaaatagtctcagttgggaagaacatttgttcttcaagcacaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aaatgtaaggatttggaaatagtctcagttgggaagaacatttgttcttcaagcacaaag 232

                                                                      
Query: 121 atctgagtttgaatccccacaagcttaaagagtgtgtgtgtgtgtgtgtgtgtgtgtgt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 atctgagtttgaatccccacaagcttaaagagtgtgtgtgtgtgtgtgtgtgtgtgtgt 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)