BAC Information

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BAC

Clone NameMSMg01-456D06
Chromosome3 (Build37)
Map Location 133,416,904 - 133,417,406
singlet/doubletsinglet
Overlap genenone
Upstream geneA630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
Downstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456D06.T7 (MSMg01no456_d06.b1)MSMg01-456D06.TJ (MSMg01no456_d06.g1)
ACCAG542561AG542562
length720768
length of high quality
(start - end)
508 (51 - 558)248 (78 - 325)
definitionCHROMAT_FILE: MSMg01no456_d06.b1 PHD_FILE: MSMg01no456_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:56 2005CHROMAT_FILE: MSMg01no456_d06.g1 PHD_FILE: MSMg01no456_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTTTTCTCGTATGAAGCCTTATGAGTTAGAAGGATGCAC
ACACATAAATATTTCACTGGTGCAAGCACTCCTGCTCCCTGATTCTCCCA
TATTGATTACCACTAATCTATCCCTTATGTCACTTTCCATTCCTGTGGAA
ATAAGATAGGTATGTGCCTGGAATAAATAGCCTTCTCCCCATTTGGAAAC
AGTGCAGAGTCTAGAGCACATTACAACCTTCCCTATAATGGAAGTACCCA
CACGCTGGCAATTGCTGTCTATAGACGTAATGAACCAAGTGGGAGGTAAT
GAGAAGTGACTGTCACGCCATCTCTGGGGCCCAGTTTCTCCTGCTGCACA
ATTACACTGTGACCCCAGAGAAACTGAGAAGAGTGCAACATTCTTTCCTT
TTCTAATGATCTTAAAATCAGCCTTAGCTTATGGAATGCGTGTGGAGGGG
CGCAAGCAGCAGCATCACCCATTTGGCAGTCCAGAGGCTGTGCGGGGGAG
GAGGGGGTCGGGGCGGGGGGAGTGTATGCTTTTTTTCCGACCTTTTCTTC
TTCTCCCTCTCCCCCGCCTTTCTTTTCCCTTCCACTTTTTTTCTTTTCCT
TCCCCTCCGTCTCCATCTTCTGCTCTCCTTTTTTCTCCCCCCCGCTCCCC
TTTCTTTCCCCCTTCTCTCC
TATCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGGGAAGTAATGAAATTAAA
GAGAAAAATAAGTGGGAAAACAGTGAATCTTTATGAATTTGAAAAAAAAA
TGGTTTTGTGGAAATGTTTATAGTGCCCAAAGAATCTATAGACTCAATGC
AATTCCTGTCAAGATACCAGTGATAGTCTTCATAGAAGTACAGAAGCATT
CTAAAATCCATGTGGGATTATAAAAAAAAGCTGAAACACTCTTGAGCAAG
ATGAAAAAGTTGAAGGCATCAAAGTATATTTATATATGGTTCAAGGCCAT
CAGAACAGGACAGCTTGTTACTGTCATGCAAATAAATCAGTGGAACAGAA
CCCAGAATACAGGGAGATTTTTTTTTTCGTGCATTTTAATCAAGCTGGTT
TTTATGAAGTTGCTCAGAACACATAATAACCTCTCAGTCAGTAACTGGCA
ATTCTGCACATTTGGCATGCAAAAGAACAAATTTCAAATCTGTTTCTTAC
CTTAGAGAAAGTTCATGAAAAAGTATTTGTGTTGAAGATGCTATACTCCT
AAATGTTTCATTTTATTTTATTATCTTTTCCACCCCTCTCAAACTTTTGT
TTTTTTCCATAATTTTTTTTCTCCCTTTTTTTTATTCACCTTTTATTCCC
ATACTTTACTTACTCTCACTTTTTTTTGCTCCTTAAATTGTTTTCCTCTT
CAAATTTTATTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_d06.b1 MSMg01no456_d06.b1 CHROMAT_FILE:
MSMg01no456_d06.b1 PHD_FILE: MSMg01no456_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:56 2005
         (508 letters)



>mm_chr3_133416700_133417606
          Length = 907

 Score =  928 bits (480), Expect = 0.0
 Identities = 498/504 (98%), Gaps = 1/504 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttttctcgtatgaagccttatgagttagaaggatgcacacacataaatattt 64
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtcttct-gtatgaagccttatgagttagaaggatgcacacacataaatattt 263

                                                                       
Query: 65  cactggtgcaagcactcctgctccctgattctcccatattgattaccactaatctatccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cactggtgcaagcactcctgctccctgattctcccatattgattaccactaatctatccc 323

                                                                       
Query: 125 ttatgtcactttccattcctgtggaaataagataggtatgtgcctggaataaatagcctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatgtcactttccattcctgtggaaataagataggtatgtgcctggaataaatagcctt 383

                                                                       
Query: 185 ctccccatttggaaacagtgcagagtctagagcacattacaaccttccctataatggaag 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctccccatttggaaaccgtgcagagtctagagcacattacaaccttccctataatggaag 443

                                                                       
Query: 245 tacccacacgctggcaattgctgtctatagacgtaatgaaccaagtgggaggtaatgaga 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 tacccacacgctggcaattgctgtctacagacgtaatgaaccaagtgggaggtaatgaga 503

                                                                       
Query: 305 agtgactgtcacgccatctctggggcccagtttctcctgctgcacaattacactgtgacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtgactgtcacgccatctctggggcccagtttctcctgctgcacaattacactgtgacc 563

                                                                       
Query: 365 ccagagaaactgagaagagtgcaacattctttccttttctaatgatcttaaaatcagcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccagagaaactgagaagagtgcaacattctttccttttctaatgatcttaaaatcagcct 623

                                                                       
Query: 425 tagcttatggaatgcgtgtggaggggcgcaagcagcagcatcacccatttggcagtccag 484
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 624 tagcttatggaatgcgtgtggaggggtgcaagcagcagcatcacccatttggcagtccag 683

                                   
Query: 485 aggctgtgcgggggaggagggggt 508
           ||||||||||||||||| ||||||
Sbjct: 684 aggctgtgcgggggaggtgggggt 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space:   446706
Effective search space used:   446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)