BAC Information

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BAC

Clone NameMSMg01-456I23
Chromosome3 (Build37)
Map Location 64,275,337 - 64,275,600
singlet/doubletsinglet
Overlap gene4930518C23Rik
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869
Downstream geneEG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456I23.T7 (MSMg01no456_i23.b1)MSMg01-456I23.TJ (MSMg01no456_i23.g1)
ACCAG542833AG542834
length801760
length of high quality
(start - end)
---275 (81 - 355)
definitionCHROMAT_FILE: MSMg01no456_i23.b1 PHD_FILE: MSMg01no456_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:25 2005CHROMAT_FILE: MSMg01no456_i23.g1 PHD_FILE: MSMg01no456_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CAAAAATTGCNNCCGCNANACAACNCACAATTTCAAAAAANNCGCGNAAN
NCNNNGGATTACCANATGCGGNGAAGAATAANCTTTGNANNGAGAAAGAG
NGAACATNTATTTTAAACCCAACAGNGGATTGGAACTTCTAAGCCTGTCT
AAACTAGCTGGAATAATTTATTACTGGTAGCTGAAGGGCTAAAANNAAAN
NGNGNCAAAANCATAANNCACANCTACACCCTTAAAAAAAAAATGNAATC
AATCTCCAACAATGCAAAATCANAANNNGAANAANAAGNCNGGAAACTTN
GCCTTCCCCAAGGTTCCAAGAAGAAAAAAAACAAAAACCCCAAGGCAAAA
TTTTCAAAAAAAAAAATTCCCAAAAAAAGGAAAAAAAAAAAAGCCCCGGG
GCCCCAAAAAAACAAAAAAAAAATTTGAAAAAAAAACCCCCCCTGNCCCC
CCCAAAAAAAAACCCCCCCGGCCCCCCCCCCCCCCCCCCAAAAAAAAAAA
AAACCCCACAAAAAAAAAAAAAACCCAAAAAAAAACCCCCCCAACAATCC
ACCAAAAAAAAAACACAAAAAAAAAAAAAAAACCCCAACAAAAACAATCC
CAAAAACACCCACCCCCCACCACCCCCAACACAAAAAAAAAAAAAAACCC
ACCACACAACCCCCCCCCCCCAAAAAAAAAAAACAAACACAAACCAAACA
ACCACCCAACAACCAACACCCCACACCCATCAAACAAACACACACCAACC
ACNCCAACCACCACAAAACACCAATACACCAACTAAAAAATACAAAAAAA
G
AAAAACCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTACTGAGTGGTACTGA
GGACAAAGCTTCATCAAAATCTCTGACAATGAAAGGATTCTGAAATAAAA
TCAGAAGACATATTCAAACCACAACACAAAACCTATGAGATGGTTCTCTG
GGGAGTGGTATGGAATGCTGATTTCCAGGCTCAAAGTAGCTAATTAGACC
CTTTAATTCACATATTATTTGCACTCTCTCTCTCTCTCTCTCTCTCTCTA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGATAGAGAGATATAGAGAGAGAGAGAGTGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGATAAATNTATGTGTGTGTGTGTGTGTGTGTGTG
TATATATATTTATTTTATATATAGATAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTATATATA
TATATATATATATANGNGGGGGGGGGTGGGAGGGNGNTTTTTNTNNNTTT
TTNTTTTTTTTTTTTTTAAAAAAAAAAAATAAAAAAANNNNNTNNNNNNN
NNNNNNTTTTTTTTNTTNTNNTTTTTTTTTGTTTTTTATTGTATGAAATT
TTTGTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_i23.g1 MSMg01no456_i23.g1 CHROMAT_FILE:
MSMg01no456_i23.g1 PHD_FILE: MSMg01no456_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:25 2005
         (275 letters)



>mm_chr3_64275208_64275882
          Length = 675

 Score =  472 bits (244), Expect = e-137
 Identities = 259/264 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttactgagtggtactgaggacaaagcttcatcaaaatctctgacaatgaaaggattc 60
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 393 tccttactgagtggtactgaggacaaagcttcatcaaaacctctgacaatgaaaggcttc 334

                                                                       
Query: 61  tgaaataaaatcagaagacatattcaaaccacaacacaaaacctatgagatggttctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgaaataaaatcagaagacatattcaaaccacaacacaaaacctatgagatggttctctg 274

                                                                       
Query: 121 gggagtggtatggaatgctgatttccaggctcaaagtagctaattagaccctttaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gggagtggtatggaatgctgatttccaggctcaaagtagctaattagaccctttaattca 214

                                                                       
Query: 181 catattatttgcactctctctctctctctctctctctctatatatatatatatatatata 240
           ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 213 catattatttgcactctctctctctctctctctctctctctctctatatatatatatata 154

                                   
Query: 241 tatatatatatatatatatatata 264
           ||||||||||||||||||||||||
Sbjct: 153 tatatatatatatatatatatata 130



 Score = 78.1 bits (40), Expect = 6e-19
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 219 tatatatatatatatatatatatatatatatatatatata 258
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatatatatatatatatatatatatatatatatatatata 169



 Score = 78.1 bits (40), Expect = 6e-19
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 221 tatatatatatatatatatatatatatatatatatatata 260
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatatatatatatatatatatatatatatatatatatata 169



 Score = 78.1 bits (40), Expect = 6e-19
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 223 tatatatatatatatatatatatatatatatatatatata 262
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatatatatatatatatatatatatatatatatatatata 169



 Score = 78.1 bits (40), Expect = 6e-19
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 225 tatatatatatatatatatatatatatatatatatatata 264
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatatatatatatatatatatatatatatatatatatata 169



 Score = 78.1 bits (40), Expect = 6e-19
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 227 tatatatatatatatatatatatatatatatatatatata 266
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatatatatatatatatatatatatatatatatatatata 169



 Score = 78.1 bits (40), Expect = 6e-19
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 229 tatatatatatatatatatatatatatatatatatatata 268
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatatatatatatatatatatatatatatatatatatata 169



 Score = 78.1 bits (40), Expect = 6e-19
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 231 tatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatatatatatatatatatatatatatatatatatatata 169



 Score = 78.1 bits (40), Expect = 6e-19
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 233 tatatatatatatatatatatatatatatatatatatata 272
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatatatatatatatatatatatatatatatatatatata 169



 Score = 78.1 bits (40), Expect = 6e-19
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 235 tatatatatatatatatatatatatatatatatatatata 274
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatatatatatatatatatatatatatatatatatatata 169



 Score = 76.1 bits (39), Expect = 2e-18
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                  
Query: 237 tatatatatatatatatatatatatatatatatatatat 275
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatatatatatatatatatatatatatatatatatatat 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 43
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 14
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)