NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAACACTATCCGCTCTGATTGCAATTATACTCATTTTCCACA
GTAAAGGAAACTATATAGCATCATGCTCTTCAATGGAAATCCCTGTTGTG
AAACTGTGAATGGGTGAGTAATATCGTGTAGGGCTGAAACTGGACCTCAG
ATGCCAGAGAATCCTAATTCCTTGGAATGTAGAATTTGGTGACTTTTCCA
ACATATGCTTTGATTTTGGTGCCCAAGATTACAATCACCTGATTTCTACA
TATTTTACTCCAACCCTGAGACTTGATTCAAATTGCTTCTATTATTATCA
TTTTCACCCAACACTCTAAATTAGAGGACTTATAAACAAGAACTGAAAGT
AAATATTTTCCAGAAAGAATAAAATGATGGAAATACACTCCTAAAATAAT
CATTTCAAAAGTAGTAAACCAGAAATGACCATTAAAGGCCAATAGAACAC
CAATTAATCCCATATCTCATAACAATCCCTCCGTGATTCCCTCTGCGAAA
GTCAGCAAGTTTCCTTTAATATAACAGAAAAATTAAATGACTCTCATGAA
ACGGAATTTGTGAACTATTTGCATTACCCAATTTGTCAATAAAACTCGAT
TGGCCCATTTTATGGCCTTTGGCTTTTAATTTCTAACTGAAACCTGGAAA
GTCTTTTTAATCCCTGGGGAAGAAAATTGTTCCCCCCTTAAAACACCCTT
TCTGACTTCTATTTTCTTTTT

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTAAGCTCTGCACT
CTGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAAGATGTGGAGAAAG
AGGAACACTCCTTCATTGTTGGTAGGATGGCAAGCTTGTACAACCACTCT
AGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTTTCCTGGGCATATATCCAGAAGATGTCCCAACCGG
TAAGAAGGACACATGCTCCACTATGTTCATATTTTTTCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATTTACACAATGGACCACTACCCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGGCAAATGGATGGACCCGGAGGGCATCATT
CTGAGTGAGTTAACCCTATCCCTATTGAATTCATATGATATGGACTCTCT
GGAAAGGGGATAATAATCCCATATTCTTTTAATCCTCCTGATTTTACAAT
TTTTTTTGTGTAACCCCCGTATTTTCCCAATTAACGTGTATTTCCCCCTG
TTTGTTCCCTTTTTCCTTTCTACAAATTTTTTTTTCTTTTTTTCTTCGGG
GCTGTAGTTTTCCTCTTTCTATTTTCGCCTTGTTTTACTTTCTATTTATA
CTTTTTCTCTTATATGTTCTCGCCTTCTTG

Query= MSMg01no457_c20.b1 MSMg01no457_c20.b1 CHROMAT_FILE:
MSMg01no457_c20.b1 PHD_FILE: MSMg01no457_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:17 2005
         (452 letters)



>mm_chr3_149885147_149886001
          Length = 855

 Score =  810 bits (419), Expect = 0.0
 Identities = 445/455 (97%), Gaps = 3/455 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgattgcaattatactcattttccacagtaaaggaaactatatagcatcatgctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ctctgattgcaattatactcattttccacagtaaaggaaactatatagcatcatgctctt 596

                                                                       
Query: 61  caatggaaatccctgttgtgaaactgtgaatgggtgagtaatatcgtgtagggctgaaac 120
           || ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 595 cagtggaaatccctcttgtgaaactgtgaatgggtgagtaatatcctgtagggctgaaac 536

                                                                       
Query: 121 tggacctcagatgccagagaatcctaattccttggaatgtagaatttggtgacttttcca 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 535 tggacctcagatgccagagaatcctaattccttggaatgtagaagttggtgacttttcca 476

                                                                       
Query: 181 acatatgctttgattttggtgcccaagattacaatcacctgatttctacatattttactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 acatatgctttgattttggtgcccaagattacaatcacctgatttctacatattttactc 416

                                                                       
Query: 241 caaccctgagacttgattcaaattgcttctattattatcattttcacccaacactctaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 415 caaccctgagacttgattcaaattgcttctattattatcattttcacccaacactctaat 356

                                                                       
Query: 301 ttagaggacttataaacaagaactgaaagtaaatattttccagaaagaataaaatgatgg 360
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 355 ttagaggacttacaaacaagaactgaaagtaaatattttccagaaaggataaaatgatgg 296

                                                                       
Query: 361 aaatacactc---ctaaaataatcatttcaaaagtagtaaaccagaaatgaccattaaag 417
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaatacactcatcctaaaataatcatttcaaaagtagtaaaccagaaatgaccattaaag 236

                                              
Query: 418 gccaatagaacaccaattaatcccatatctcataa 452
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 gccaatagaacaccaattaatcccatatctcataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 855
Length adjustment: 10
Effective length of query: 442
Effective length of database: 845
Effective search space:   373490
Effective search space used:   373490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)