BAC Information

Click to search

BAC

Clone NameMSMg01-457I18
Chromosome3 (Build37)
Map Location 20,919,709 - 20,920,109
singlet/doubletsinglet
Overlap genenone
Upstream geneHps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457I18.T7 (MSMg01no457_i18.b1)MSMg01-457I18.TJ (MSMg01no457_i18.g1)
ACCAG543588AG543589
length787755
length of high quality
(start - end)
411 (51 - 461)401 (87 - 487)
definitionCHROMAT_FILE: MSMg01no457_i18.b1 PHD_FILE: MSMg01no457_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:47 2005CHROMAT_FILE: MSMg01no457_i18.g1 PHD_FILE: MSMg01no457_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATAAAATTTCCATCAGATATTATGAAACCATCAATTTAT
CTATACAGTATTACTATGTGAGAGTACATCTTCATGTTGATTTTGCAGGA
AATCTGACAAATAGGGTGGGCTAATGCCCAGAAATCATTAGACTATGCAA
TACTAACTGAACAGGCATATAGGCACCAAGGAACAAGCCTGGGATGATAA
AGACTCTGCATCTAAGAGCTCACCCATTGCAGGCAATGCAAAATGGTGGA
CTAACTTCAGAAAACTCACTTGTATGCTCTCAGACTTTCCTAAATGGAGT
CTGACAGATGTGCCCAGATGTTTGTTTGTTTGTTTGAATGTACCTGGCTT
TTTCTATATACACTAGAGTTATAGAGGACATACTTTCCTTCTATTCATTC
TGGAATATTGTCAGTCAAGATCTACTTCCTCTTCTCTAATTCTTTGGACT
TTATCTTTTGGTGGACTTTAACTTTTGCGTTTCACTTCTCCATTTCCTGG
TTCTAAATTTAAGTCCTCCTTCTTTAAAACCTAAAAGCCCCCAATTCCTT
GGGTGGGCCGGAACTTTAAATTTTCTCAGGAAATTTTTTCCCATATAAAA
CCCCCGGTGATTCTTTCTCTTTATTTCTTTCTTTGCTCAACATCACTCCA
TTATTTTTATTATTTTTTCCTACACCCCTTTTTCCTTCTTTTAAATTTCC
TAAATTTTCCTCTTTTCTTCCCTCCTTCCCTCTTTTN
ACTAATTTTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAAATCCGTCCT
AAGAAATTAACTATTTCCATTGTATAAAATATATTATTTACTCTCCTAAA
TTGTGTAGTCACTGCTTTAAAATCTGTCTGGAACTTCCTGTTAAAGTCTC
AATACCCCTCCCCCACTTCAGACCCCTCCGTTAAAAATGGTAAGGAAATA
AGAATAGAGAGAACATGTGCAGGATTCCAAATTACTGTGTAAATGAGCAT
TTCTGTTTGTATTTGAAATCATGAGTTTAGGATAGAAAAATGGCTCATCT
TTTCCTGGAAAAACAGCTTTATTTTTGTAGACCTCTGTTCTTTTTGGCAC
TTGGTTCCAGAGATACGATCTGTCTCTTGCAGTCACAATCATGTAGTTGA
TGGATTTGGCACAGCACTCCTGTTCATGATTCCACAATGTCAAATGTGTG
ACATTTTCTGTAACTGTCTCTCAAAAGCACACAGAGGTACTCAGAAATCT
CAGCACCTGTGGTTTCCATAAACCTTCCCTATAAAAATTTTTTTTGCACC
TTTAATGCACTTGGGCTTTTTTTTGAAAAATTTGTATCTCTTAAATAAGA
TTTTTGTTTTTTTTAAATTACTTTTTCCCTTTATTTATTTCCTTGTTTTA
TTCACAACAATTTCTTTTCATGTCTCCCCTTTATAACTTAATACATCATT
GTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_i18.g1 MSMg01no457_i18.g1 CHROMAT_FILE:
MSMg01no457_i18.g1 PHD_FILE: MSMg01no457_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:47 2005
         (401 letters)



>mm_chr3_20919509_20920309
          Length = 801

 Score =  775 bits (401), Expect = 0.0
 Identities = 401/401 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaatccgtcctaagaaattaactatttccattgtataaaatatattatttactctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaaatccgtcctaagaaattaactatttccattgtataaaatatattatttactctcc 260

                                                                       
Query: 61  taaattgtgtagtcactgctttaaaatctgtctggaacttcctgttaaagtctcaatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaattgtgtagtcactgctttaaaatctgtctggaacttcctgttaaagtctcaatacc 320

                                                                       
Query: 121 cctcccccacttcagacccctccgttaaaaatggtaaggaaataagaatagagagaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcccccacttcagacccctccgttaaaaatggtaaggaaataagaatagagagaacat 380

                                                                       
Query: 181 gtgcaggattccaaattactgtgtaaatgagcatttctgtttgtatttgaaatcatgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcaggattccaaattactgtgtaaatgagcatttctgtttgtatttgaaatcatgagt 440

                                                                       
Query: 241 ttaggatagaaaaatggctcatcttttcctggaaaaacagctttatttttgtagacctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggatagaaaaatggctcatcttttcctggaaaaacagctttatttttgtagacctct 500

                                                                       
Query: 301 gttctttttggcacttggttccagagatacgatctgtctcttgcagtcacaatcatgtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttctttttggcacttggttccagagatacgatctgtctcttgcagtcacaatcatgtag 560

                                                    
Query: 361 ttgatggatttggcacagcactcctgttcatgattccacaa 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgatggatttggcacagcactcctgttcatgattccacaa 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)