BAC Information

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BAC

Clone NameMSMg01-457L14
Chromosome3 (Build37)
Map Location 59,230,619 - 59,231,089
singlet/doubletsinglet
Overlap geneEG666756
Upstream geneTsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751
Downstream geneEG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457L14.T7 (MSMg01no457_l14.b1)MSMg01-457L14.TJ (MSMg01no457_l14.g1)
ACCAG543722AG543723
length772751
length of high quality
(start - end)
473 (70 - 542)249 (83 - 331)
definitionCHROMAT_FILE: MSMg01no457_l14.b1 PHD_FILE: MSMg01no457_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:03 2005CHROMAT_FILE: MSMg01no457_l14.g1 PHD_FILE: MSMg01no457_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTAAATACACCATCATATTTCTTTCTCAAAGTGTAAACAGAG
AAATAAATACATCTCCCAAGAACAGAAGAAAGGCAAATATCCCTCAGGAG
TGACCACTGTACACTACGTTACAGTCTCTTACCTTTTACACTTTATGACA
TGCTCTGGGCACAGAATTCTGAGCATCTTCCTGTTCCTGCCCATACTTGG
TAGCTTAACATTTAGATTGCATCCTGATCTTTATTTCTGGTACCTTCTTT
CTCACCTTACTTGCCTTGTTTTATATAGCTACAGAAATTATTGATCAACA
TTTGTGACATATTGACCACCTAAGAATAAACCTTTGGTTGAACATTGAAG
TGTAAAACTTTCATTCCTAATTTTATAATTTTGTCCACTTTCTGCCTCTA
CTTGGTTACATATGTTTCTCTGAACTTTGAAAATTCTCACAAACATTAAT
TTTTCACTAAAATATTTTATTTTTCTCTAATGTGTTTCTTCATGGTTATA
TTTTATCTGTTTATGTCTAACATGATGGATGGCAATTTATACATTTTATA
ATAATAGTCAATATGTTTTGCTATCTTAGAAGGAACATTGACAATTGCTG
TCTTGTAAAGAATTTTCCTTTTGGTCCCCCTATCCAATATCTTTTTACGT
TGACTTATGACTTTATTCCCCCCCCCCCGTTTAATTTTTTTAAGGAAACA
CCCACATGCGTATCAATAATCG
TTTTTTTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACTAGAGACA
CTGAAACTTATAGAGGAGAAAGTGGGGATGAAACAAAGATGAAATTTCAA
GACCTGTAAGTCATATAAAGTACTCAGAAATTGCTTGTTATTTGTGAGCC
TAGAGGCTGCCTGGCACTGAGAAAAAAGAAAAACAAACCTGGGTATGCCC
CGTAGTTAAAACATTCCTGAGAACAGCTTAACCTAAAAGATAAAAAGGAA
TGTGAAGTCATAACAGGGCTATCTGAACTATTTTTTATTCTCACAGAACT
TTGACACCCTGCACGTACATGTAATTTTTCTGCTGATGTTTGAATAAGCC
AATAGTGTGTTGCTATGCTGAATTCCACGCCCCTAAGCCCCTTACCCCAT
TAAAAACCCCTAGTTTTCGAGCCTCAGGGTCAAATCCACTGTCTCCTGCG
TGTGATACCTTTCGATCCGGAGATCTGTCATTAAACTGCCTCATGTGTTT
ACAACAAGATAGGATTCTCGTGTTTCTTTTGGGTTCTCTCTCTCTCTCTC
CCAAGGTTTGAAGATGGTTCCCCTATAATAAGGCGTCTTATAGGGAATTG
CCCTCCAAAATAAGGGCTTTTTTTTTTTTTTTTTTTTTTTACAAAAAACT
CCCGGGCTTTTGGCCTGTTTCAATATAAAAATTGTGCTAAGCGTATCTCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_l14.b1 MSMg01no457_l14.b1 CHROMAT_FILE:
MSMg01no457_l14.b1 PHD_FILE: MSMg01no457_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:03 2005
         (473 letters)



>mm_chr3_59230419_59231289
          Length = 871

 Score =  808 bits (418), Expect = 0.0
 Identities = 459/476 (96%), Gaps = 8/476 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatatttctttctcaaagtgtaaacagagaaataaatacatctcccaagaacagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatatttctttctcaaagtgtaaacagagaaataaatacatctcccaagaacagaaga 260

                                                                       
Query: 61  aaggcaaatatccctcaggagtgaccactgtacactacgttacagtctcttaccttttac 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 261 aaggcaa-tatccctcaggagtgaccactgtacactacgttacagtctcttaccgcttac 319

                                                                       
Query: 121 actttatgacatgctctgggcacagaattctgagcatcttcctgttcctgcccatacttg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 320 actttatgacatgctctgggcacagaattctgagcagcttcctgttcctgcccatacttg 379

                                                                       
Query: 181 gtagcttaacatttagattgcatcctgatctttatttctggtaccttctttctcacctta 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 gtagcttaacatttagattgcatcctgatctttatttctggtaccctctttctcacctta 439

                                                                       
Query: 241 cttgccttgtttta---tatagctacagaaattattgatcaacatttgtgacatattgac 297
           |||||||||    |   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttgccttg----aaaatatagctacagaaattattgatcaacatttgtgacatattgac 495

                                                                       
Query: 298 cacctaagaataaacctttggttgaacattgaagtgtaaaactttcattcctaattttat 357
           ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 496 cacttaagaataaacctttggttgaacattgaagtgtagatctttcattcctaattttat 555

                                                                       
Query: 358 aattttgtccactttctgcctctacttggttacatatgtttctctgaactttgaaaattc 417
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 556 aattttgtacactttctgcctctacttgtttacatatgtttctctgaactttgaaaattc 615

                                                                   
Query: 418 tcacaaacattaatttttcactaaaatattttatttttctctaatgtgtttcttca 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tcacaaacattaatttttcactaaaatattttatttttctctaatgtgtttcttca 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 871
Length adjustment: 10
Effective length of query: 463
Effective length of database: 861
Effective search space:   398643
Effective search space used:   398643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)