BAC Information

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BAC

Clone NameMSMg01-457N06
Chromosome3 (Build37)
Map Location 144,029,411 - 144,029,698
singlet/doubletsinglet
Overlap genenone
Upstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952, Lmo4
Downstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457N06.T7 (MSMg01no457_n06.b1)MSMg01-457N06.TJ (MSMg01no457_n06.g1)
ACCAG543802AG543803
length8021,353
length of high quality
(start - end)
293 (49 - 341)---
definitionCHROMAT_FILE: MSMg01no457_n06.b1 PHD_FILE: MSMg01no457_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:11 2005CHROMAT_FILE: MSMg01no457_n06.g1 PHD_FILE: MSMg01no457_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACTCTTGCTCTAGGAGTTGAATAGGGGCAGAAAGAGTGAGC
CCATGGGTGACGCCTTAAGTCATGAAGTGAAATTAAGGATTATAATTTCT
AGTGACAGAAGTAAGAACTGCTTCAGGTTCTAGGCCAGGTGGCTTGGCTT
GATCCTTCAAGTCCAGACTAGTTATGATATTGCCTGGAAACACAAGAAAA
CTATACTGGGTAGACTGGATTGTGATGATTGAGCAACAGAAAAAAACTAG
CTATTTTAATCCTGGCCTTTGGAAAGCCGAGGCAGAGGGATCTCTGCGAG
TTGAAGCCCGAGAATGCTACTACTGAGTGAGACCTTGGCAGGGGGGAAGA
AGGAAGTTAAGGATCACCCCCCTCCCCACTTTTTTTTTTTTCCTCTCTTT
TTATATTTTTTACCCCCCTCTCCTCATTTCCCTCTTCTTCCTCTCTTATT
CTCCTTTCTTTCTCTCTATTCTTCTCCTTTTTTTCTCCTCTTATCTTTTC
TCCTTTTTTTTTTATTCTTCTTTCTCTCTTCTTTTCCTTTCTTCTTTTTT
CTTTCTATTTTATTTATCATAATCCAGCGTCTTTCTTCCTCTATTCTTCT
TCTTTTCTATTTCCTTTTTTTTTCCTTTTTTATCTCTTTTTTTTTTTTTT
TTCTTTTTCTCTACTCTTTCCTTTCTACCTTCCTTCTCTCTTTTCCCTAT
TTATTTCCTTCCTTATTCTTCCTTTGCCTTTTTCTTCCCCCTTCTTTTTT
CG
TGGTGTGGTCAAATAATGATAGTATTTAATGATACGATGATTATACTGCA
AGTATCCTCCATCATACAAATACGAGTTAAGACTTATACTCGAGTGATCT
CCCACGCAAGAGAGCANCCAACAGAGAAGTAGGACACTGAGACCGGATAT
GTCTGCGCCACGATATCTAAGGAGAGGTGGAGTGCGACGCGTGCGTGCGA
GACGTGAGAGATGACAGAGGACAAGGAGAGTATAGCGAGGAGAGAGGTGG
GATGTGTATAGGATAATGCTAGATGTATCTGTAATTGTTGAGATACNACT
AACATAGTTTGATTTAGCGCACGCGCCTACATTCATGACGACCGGTCCCA
TGGAGCACGACGGCTGTCCCGCTGTGGCCCCCGCTAACAGTAGCTCTGCT
CTTTGTTGCAGAATGATAATTTCTTTNAANAGACNGACCNCAGGCCAACT
GCGATGCCGGCACGTACGTATACCCGNAACCAATAACAATAGAACGGAGT
TCGCCCCATCTGCACACTATATTCTATCTATGTCGCTCANCACTGCTAAT
ACGCAACAGATACAGGCATAGCAGACAAATATCGCACCCGACACCCAGAT
CAGACGAGACCAAGATTGTGGAGCGTATATTGTAGTAATACGAATACACG
ACACACTCACGACGTGTGACGAATCATCAAATATCGCGATCTCACGCTGA
CGCCGTGTTGACACAAGAAGAATGACTGAAATGACTAAAACGGTAATATC
ATGAGAAACATCGTAGGAACGGACGTGAATAGTGAAGCGGATGATAATAG
ACAACAAAATACTTATGAGCAGCTTCACGCTATATGTTAGAGTNGCGAAT
GATAGTGACCACGTGGTAGGAGCATTATGAGTAAGCTCCATAGATGAGTA
TATAATGATAGACATAGCAGGCGACGATATGAGGGAGACAGAGACGAAGC
GAGGAGCAAAATATATGAGACTTAATATATGAATTAACGAGGAGCGGCAT
GAACACAGTGAAGCGAGAAANGATATGCGGACGCAGATATTAATTGCGGT
CTAGGATACATTACGTGCATCGAAGACACATATACGTTGAGGTAAACCTC
GACGCGCGGTAGTGCGTAGATCTAAACGCACAGACTGAGACTAGTATCGA
CGTGTATGTGATGTCGAAGTCACTGCGTGATGAGCTCACAGTACACCACG
GAATAACTAGACTCGCAGTACAGACATACATACACATGTCAGCCTCGTGC
ACAGACAATATCATCAAGCACATATGTCACATACTACACATGTAGCACGC
TTAATATATATTATTATATATACACACTAATACCAAATAATATATAAATC
AAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_n06.b1 MSMg01no457_n06.b1 CHROMAT_FILE:
MSMg01no457_n06.b1 PHD_FILE: MSMg01no457_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:11 2005
         (293 letters)



>mm_chr3_144029207_144029898
          Length = 692

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctactcttgctctaggagttgaataggggcagaaagagtgagcccatgggtgacg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaattctactcttgct-taggagttgaataggggcagaaagagtgagcccatgggtgacg 434

                                                                       
Query: 65  ccttaagtcatgaagtgaaattaaggattataatttctagtgacagaagtaagaactgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccttaagtcatgaagtgaaattaaggattataatttctagtgacagaagtaagaactgct 374

                                                                       
Query: 125 tcaggttctaggccaggtggcttggcttgatccttcaagtccagactagttatgatattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcaggttctaggccaggtggcttggcttgatccttcaagtccagactagttatgatattg 314

                                                                       
Query: 185 cctggaaacacaagaaaactatactgggtagactggattgtgatgattgagcaacagaaa 244
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 313 cctggaaacacaagaaaactatactgggtagactggattgtgacaattgagcaacagaaa 254

                                                            
Query: 245 aaaactagctattttaatcctggcctttggaaagccgaggcagagggat 293
           ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 253 aaaactagctattttaatcctggcctttggaaagcagaggcagagggat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)