This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-458D15
Chromosome
3 (Build37)
Map Location
159,579,876 - 159,580,485
singlet/doublet
singlet
Overlap gene
Gpr177
Upstream gene
LOC668905
,
LOC668907
,
Depdc1a
,
Rpe65
Downstream gene
none
Link
Open Mouse BAC browser
Click to get alignment info.
name
Ankrd13c
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:433667
MGI:2139746
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Sfrs11
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:69207
MGI:1916457
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Lrrc40
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67144
MGI:1914394
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Lrrc7
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:242274
MGI:2676665
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100041008
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041008
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
pseudo
: _no_value
name
LOC668905
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668905
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
LOC668907
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668907
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
pseudo
: _no_value
name
Depdc1a
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:76131
MGI:1923381
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Rpe65
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:19892
MGI:98001
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gpr177
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:68151
MGI:1915401
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ankrd13c
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:67972430
GeneID:433667
MGI:2139746
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ankyrin repeat domain 13c
transcript_id
: NM_001013806.1
name
Sfrs11
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142378730
GeneID:69207
MGI:1916457
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: splicing factor, arginine/serine-rich 11
transcript_id
: NM_026989.2
name
Lrrc40
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142361498
GeneID:67144
MGI:1914394
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: leucine rich repeat containing 40
transcript_id
: NM_024194.3
name
Lrrc7
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124486884
GeneID:242274
MGI:2676665
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: leucine rich repeat containing 7
transcript_id
: NM_001081358.1
name
Depdc1a
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31542024
GeneID:76131
MGI:1923381
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: DEP domain containing 1a
transcript_id
: NM_029523.2
name
Rpe65
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:19920337
GeneID:19892
MGI:98001
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: retinal pigment epithelium 65
transcript_id
: NM_029987.1
name
Gpr177
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:98986315
GeneID:68151
MGI:1915401
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G protein-coupled receptor 177
transcript_id
: NM_026582.3
name
Ankrd13c
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:67972431
CCDS:CCDS17933.1
GeneID:433667
MGI:2139746
definition
codon_start
: 1
product
: ankyrin repeat domain 13c
protein_id
: NP_001013828.1
name
Sfrs11
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33469007
CCDS:CCDS17934.1
GeneID:69207
MGI:1916457
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
codon_start
: 1
product
: splicing factor, arginine/serine-rich 11
protein_id
: NP_081265.1
name
Lrrc40
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31541911
CCDS:CCDS17935.1
GeneID:67144
MGI:1914394
definition
GO_function
: GO:0016740 - transferase activity [Evidence IEA]
codon_start
: 1
product
: leucine rich repeat containing 40
protein_id
: NP_077156.2
name
Lrrc7
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124486885
GeneID:242274
MGI:2676665
definition
GO_function
: GO:0005515 - protein binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
codon_start
: 1
note
: densin 180
product
: leucine rich repeat containing 7
protein_id
: NP_001074827.1
name
Depdc1a
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31542025
CCDS:CCDS17936.1
GeneID:76131
MGI:1923381
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
codon_start
: 1
product
: DEP domain containing 1a
protein_id
: NP_083799.2
name
Rpe65
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:19920338
GeneID:19892
MGI:98001
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_process
: GO:0007468 - regulation of rhodopsin gene activity [Evidence IMP]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0042574 - retinal metabolism [Evidence IMP]; GO:0007601 - visual perception [Evidence IMP]
codon_start
: 1
exception
: mismatches in translation
note
: retinal pigment epithelium, 65 kDa; modifier of retinal degeneration 1
product
: retinal pigment epithelium 65
protein_id
: NP_084263.1
name
Gpr177
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:98986316
GeneID:68151
MGI:1915401
definition
GO_function
: GO:0004872 - receptor activity [Evidence IEA]
codon_start
: 1
product
: G protein-coupled receptor 177
protein_id
: NP_080858.3
name
LOC100041008
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100041008
definition
number
: 1
pseudo
: _no_value
name
LOC100041008
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100041008
definition
number
: 2
pseudo
: _no_value
name
LOC668905
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668905
definition
number
: 1
pseudo
: _no_value
name
LOC668907
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668907
definition
number
: 3
pseudo
: _no_value
name
LOC668907
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668907
definition
number
: 2
pseudo
: _no_value
name
LOC668907
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668907
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-401E05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358G13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430G11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-274I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-344H16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-050L14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-382P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-074K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-112L09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395I22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-260N02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419E17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-079C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-076M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506D18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-506D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-539O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-164M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305A19
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-504N10
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-375D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-547F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-099C07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-157D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-375O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-114L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-106K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-190E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-371K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-539H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-440K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-058N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422C24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057I01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-343F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-510M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-184O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-490P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-472K05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-064M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-302P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-071E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-320L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458D15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-029H06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-192G02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-327I08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-107A05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-279I09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-040G04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-067C17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-031I11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-153C13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-072P20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-212P05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-083N22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-206J09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-163J10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-244E05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-315P15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-168K17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-251J21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-174P09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-287A19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-051O05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-320P06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-085D12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-046P14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-329F06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-346G12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240J11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-109E11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-183K20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-199J01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-154B20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-178A14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159B21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-216L15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-195B22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-174J18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-266I02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-325K02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-042P06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-163P23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-278E18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-211H15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-251D04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-239K23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-242B20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-170M23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-145N20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-013N21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-309I20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-272J11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-103L23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-039J17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-085C07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-158K23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-187I04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-245K15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-031J06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-264B07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-031L22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-102A23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-156B08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-021O10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-047D16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-085H04
singlet/doublet
singlet
plural/unique
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B6Ng01-154O06
singlet/doublet
singlet
plural/unique
unique
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B6Ng01-093M06
singlet/doublet
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plural/unique
unique
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B6Ng01-071L01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-121L05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-121K22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-308G05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-258B10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-272G21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-001E10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-349H21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152L19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-131B14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-060O17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-302G06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-302H07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-110B01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-283P17
singlet/doublet
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plural/unique
unique
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B6Ng01-190F13
singlet/doublet
doublet
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unique
clone name
B6Ng01-111E20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-096A03
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singlet
plural/unique
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clone name
B6Ng01-113C09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-060K02
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doublet
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unique
clone name
B6Ng01-344P23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-308G08
singlet/doublet
singlet
plural/unique
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clone name
B6Ng01-323C21
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singlet
plural/unique
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clone name
B6Ng01-290A09
singlet/doublet
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B6Ng01-114L20
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B6Ng01-276E24
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doublet
plural/unique
unique
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B6Ng01-197A24
singlet/doublet
doublet
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B6Ng01-222B18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-142F03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-177D11
singlet/doublet
doublet
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unique
clone name
B6Ng01-234B10
singlet/doublet
doublet
plural/unique
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clone name
B6Ng01-324L20
singlet/doublet
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clone name
B6Ng01-311J03
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plural/unique
unique
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B6Ng01-130F16
singlet/doublet
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plural/unique
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clone name
B6Ng01-280K18
singlet/doublet
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plural/unique
unique
clone name
B6Ng01-082P14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-241I11
singlet/doublet
singlet
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unique
