Query= MSMg01no458_d18.b1 MSMg01no458_d18.b1 CHROMAT_FILE:
MSMg01no458_d18.b1 PHD_FILE: MSMg01no458_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:46 2005
(589 letters)
>mm_chr3_45298591_45299579
Length = 989
Score = 739 bits (382), Expect = 0.0
Identities = 385/386 (99%)
Strand = Plus / Minus
Query: 204 ggcctggtatagctgtcccctgaaaggctttgccagagactgaccaatacagatatgtgt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 ggcctggtatagctgtcccctgaaaggctttgccagagactgaccaatacagatatgtgt 930
Query: 264 gcatgtagccaacctttggtctgagcaagggtccccaatagaggagttagacaaaggact 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gcatgtagccaacctttggtctgagcaagggtccccaatagaggagttagacaaaggact 870
Query: 324 gaagtggcttaaggcatttgcaatttgtgtatttcctttttagatataaaacttcactaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaagtggcttaaggcatttgcaatttgtgtatttcctttttagatataaaacttcactaa 810
Query: 384 attattttattttattttaagataaaacatccagattataaccaggagggtacttgctat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 attattttattttattttaagataaaacatccagattataaccaggagggtacttgctat 750
Query: 444 gcatcaagtcttatattcagaatgaaataaatgcctactctttttcaaaatacacacagg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gcatcaagtcttatattcagaatgaaataaatgcctactctttttcaaaatacacacagg 690
Query: 504 ttctagttttgggcagtagacagactcattgttttatttggcccctccaaccccagcagt 563
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttctagttctgggcagtagacagactcattgttttatttggcccctccaaccccagcagt 630
Query: 564 ctgtgactagtcacatctttttgcaa 589
||||||||||||||||||||||||||
Sbjct: 629 ctgtgactagtcacatctttttgcaa 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_d18.g1 MSMg01no458_d18.g1 CHROMAT_FILE:
MSMg01no458_d18.g1 PHD_FILE: MSMg01no458_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:46 2005
(575 letters)
>mm_chr3_45122461_45123435
Length = 975
Score = 996 bits (515), Expect = 0.0
Identities = 560/579 (96%), Gaps = 8/579 (1%)
Strand = Plus / Plus
Query: 1 agatcagaatttattgtatctggaggctatatattgaaggggctaaaaacgttggcttcc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatcggaatttattgtatctggaggctatatattgaaggggctaaaaacgttggcttcc 260
Query: 61 ctttcttttcataccctcccctacatgagatagtacagagatgattgttccagtcccatt 120
|||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 261 ctttcttttcatacccacccctacatgatatagtgcagagttgattgttccagtcccatt 320
Query: 121 ggagcaagagaattaagagaaacaacttcactctcagcctgcttccatggagcacatcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagcaagagaattaagagaaacaacttcactctcagcctgcttccatggagcacatcac 380
Query: 181 caaactattctacttttttaaactactgctaactctgtaaattccaggtccaggtgtgct 240
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagctattctacttttctaaactactgctaactctgtaaattccaggtccaggtgtgct 440
Query: 241 cctagatatttt----gtcccaagcttttccccaaataagatcagtgcacattgatcagg 296
|||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctagaga----cccaggcccaagcttttccccaaataagatcagtgcacattgatcagg 496
Query: 297 ctctaggtccactgtctggattcaaagatcagatctccatgccaaacccaggtacaaaac 356
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 497 ctctaggtccactgtctggactcaaagatcagatcttcatgccaaacccaggtacaaaac 556
Query: 357 tcatttaatgctgagccttgtaccatgaaagcctggctgagaatacctgatcaagaatcc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcatttaatgctgagccttgtaccatgaaagcctggctgagaatacctgatcaagaatcc 616
Query: 417 tcatgagtcctacaagtgggattgttcagaatctctagatgagatgtttacatttgttga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcatgagtcctacaagtgggattgttcagaatctctagatgagatgtttacatttgttga 676
Query: 477 gaaaccagttcataatcacatgtaaacaaaataaaattttcaacaaataaagaagaaaac 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaaaccagttcataatcacatgtaaacaaaataaaattttcaacaaataaagaagaaaac 736
Query: 537 cttggaacattcagcaagaaaatgtattaaatcctgtca 575
|||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cttggaacattcagcaagaaaatgtattaaatcctgtca 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
