Query= MSMg01no458_f21.b1 MSMg01no458_f21.b1 CHROMAT_FILE:
MSMg01no458_f21.b1 PHD_FILE: MSMg01no458_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:56 2005
(569 letters)
>mm_chr3_140014495_140015464
Length = 970
Score = 984 bits (509), Expect = 0.0
Identities = 550/567 (97%), Gaps = 9/567 (1%)
Strand = Plus / Plus
Query: 5 gaattcctctgcctttgcaataataataataataatagcaataattaataatattaaata 64
|||||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct: 211 gaattcctctgcctctg------taataataataatagcaataattaataataataaata 264
Query: 65 atagtaataatagcaatcatcattcacgatatagtcactgttcatcaatgcgaattttga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagtaataatagcaatcatcattcacgatatagtcactgttcatcaatgcgaattttga 324
Query: 125 tttatagaaaatggaaagaatcctgagtagaaacatttcataagcatttcaatgtttttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttatagaaaatggaaagaatcctgagtagaaacatttcataagcatttcaatgtttttt 384
Query: 185 ttccagtcaaggggaaattttctttccttctgtgatgtgtctttgaaaggagttgtcaaa 244
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 385 ttccagtcaaggggaaattttcttttcttctgtgatgtgtctttgaaaggagttttcaaa 444
Query: 245 gaaaatgaatgtagaagtagagacataaaaatgtattaaattttaaaagttagtgattga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaaatgaatgtagaagtagagacataaaaatgtattaaattttaaaagttagtgattga 504
Query: 305 gtgtcactatttataagcccaattggatttagtaacagtctcctttcctactagaaaggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgtcactatttataagcccaattggatttagtaacagtctcctttcctactagaaaggt 564
Query: 365 aggaaaagaagacattgaccaaataacaggattgtgattgtgtttagatcatttcagtgg 424
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 aggaaaaaaagacattgaccaaataacaggattgtgattgtgtttagaccatttcagtgg 624
Query: 425 gcttggagagcatgacttggtaaaaatttgtttgtccaaatgttgctgccttcatgacac 484
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcttagagagcatgacttggtaaaaatttgtttgtccaaatgttgctgccttcatgacac 684
Query: 485 tgggattgatctgactggcaatgggggaacaaaaaaa-gacagatatagtcccagtaaag 543
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 685 tgggattgatctgactggcaatgggggaacaaaaaaaagacagatatagttccagtaaag 744
Query: 544 ctagtattggaca-tttcatatatgcc 569
||||||||||| | |||||||||||||
Sbjct: 745 ctagtattgga-agtttcatatatgcc 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space: 536640
Effective search space used: 536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_f21.g1 MSMg01no458_f21.g1 CHROMAT_FILE:
MSMg01no458_f21.g1 PHD_FILE: MSMg01no458_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:56 2005
(619 letters)
>mm_chr3_140191137_140192153
Length = 1017
Score = 1083 bits (560), Expect = 0.0
Identities = 602/618 (97%), Gaps = 6/618 (0%)
Strand = Plus / Minus
Query: 1 tctgcaaacttttagttcaattcagaatgttaggtatataacttatcccaactttgaaat 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 814 tctgcaaacttttagttcaattcagaatgttaggtatataacttatcctaactttgaaat 755
Query: 61 ttaagaagaaaataatatgagtacaatatgaaaaaagaggtaactgggcttgaactttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ttaagaagaaaataatatgagtacaatatgaaaaaagaggtaactgggcttgaactttag 695
Query: 121 taagtatattactaaaatttgatcccacatataaaagatacaggatgcagagtccataaa 180
| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 694 t-agtatataactaaaatttgatcccacatataaaagatataggatgcagagtccataaa 636
Query: 181 actaagtagagatgaagtcaggagagatagtgttttcatattttaaggcttgcttaaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 actaagtagagatgaagtcaggagagatagtgttttcatattttaaggcttgcttaaatt 576
Query: 241 agtctgact--gtatttgttgtgagtggagactgtgagcctcacatccaggcagagtgtt 298
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agtctgactgagaa---gttgtgagtggagactgtgagcctcacatccaggcagagtgtt 519
Query: 299 catcatcacaagatcactgtgtattttcagactcattctagtcaatgtctactgagagat 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 518 catcatcacaagatcactgtgtattttcagactcattctagtcaatgtctactgagaggt 459
Query: 359 tactccaaatgtaggagacaagaggaaaagataattgaattctgggacctatactaatag 418
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tattccaaatgtaggagacaagaggaaaagataattgaattctgggacctatactaatag 399
Query: 419 tgcataaaattccagtagaaccatagagatctctgataaaccagaagcagagttatatta 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgcataaaattccagtagaagcatagagatctctgataaaccagaagcagagttatatta 339
Query: 479 aaatcaatgactatgagtgacttctgagtgaagatcaagttgtcttcagtgtgccaacct 538
|||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 338 aaatcaatgactgtgagtgatttctgagtgaggatcaagttgtcttcagtgtgccaacct 279
Query: 539 ctttactatttagggtctacataaccacatatagttagagataaaactgtgttataggat 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctttactatttagggtctacataaccacatatagttagagataaaactgtgttataggat 219
Query: 599 gccaattgccattcttaa 616
||||||||||||||||||
Sbjct: 218 gccaattgccattcttaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1017
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1007
Effective search space: 613263
Effective search space used: 613263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
