BAC Information

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BAC

Clone NameMSMg01-458H13
Chromosome3 (Build37)
Map Location 24,259,231 - 24,259,600
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC100039548, EG665189
Downstream geneLOC100039592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458H13.T7 (MSMg01no458_h13.b1)MSMg01-458H13.TJ (MSMg01no458_h13.g1)
ACCAG544293AG544294
length740750
length of high quality
(start - end)
154 (332 - 485)329 (330 - 658)
definitionCHROMAT_FILE: MSMg01no458_h13.b1 PHD_FILE: MSMg01no458_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:04 2005CHROMAT_FILE: MSMg01no458_h13.g1 PHD_FILE: MSMg01no458_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAACA
GCGCGGAATTCACTGAATTACAAAACAGGAATTTTAGAAGACTTAGAATC
TAATGATTGCTTTAACATTCCTGCTGACATTTTCTTGATGTTGGCTAATG
TTGGCTAATATGTGTCTTTTAGATAAGTATATTTTAGTTCTTCTAATTTT
TTTTCTTATTGAAAGTGAATAACTTTTAAGATTTTTCTTCCATCAGTATT
TCATGTTTTTCCTCAATACTTTTGTAGCAAAGCATTACTTTCCAAAGCAA
AAGATGGAACTTTGTGGAGATTTANTTTTTGAATAATCTTGAATACATAG
GAATTTAGGTTTCTGTCTAATTGCATGCCACTCCAGAAGTAAATATTTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCACACACACACACACTCATACACACATT
CTCTCATTTTTATTGATACTCCACTACTTTTATTAATAAAGTGGAACAAG
CTGTCTCTTTTGAGTAGATTCTTTCACACGGCAATGTTTAAAGGGTCGAA
TATCATATGTCAACCATAGATGTTTTGTCATCCTCTTTTTATACGTGCAC
ACCTTTTTGTTTTTTTTTTTTTTTAACCTCAATTGTGAGTCACAATGTTT
CTAACATGGTAAAATTCATGCCCCTATTTACACCCCTCTG
CGATGATAGGNGTAGGCCTGGNGGACGCCTGGTTTCAAAACTGGGGNGAA
CTATAGAAGGTTACAAAAAACTCAGGCAAGATAAATGACTACTAAGATGA
ACACCAAAACTGTGAATTTTACCATTGTACTGGACAAATAATCTCCCCCT
ACCTTTTTAGGGATAAATAGCATCAAGAGCTAATTATAACATTCCACACT
GCATGTTAATTATCCATTGCTCATTACAAATCTTACTATTGGATGTCCCT
TCCTATGAATGTGGATTGAAATGAAAATACAAGATTGGTGCGCATACACA
ATAGATTCTCTTGGTTTGNNTTGNTTTGNTTTTTATTTTCCACTAAAAAT
CACCATTAATTAGACAAATATACTCTTGTGATTGGTCAATGCCTGGTCAG
CAACTGGATGCATGATTAAATTCACTTGAGGAAAACACAGCGTAGAAATT
TGATCATAGAAATACAAAAAGCTGTTATAAAGCTCTATTAAAGAAATACA
GAGAATAAATAAAATTTCATTTTAAATAGCAATAGTTATTTAAGAATTCA
AACTTACCATATATTTATTACTAAAAGTTCAAAAAGTTAAAATTTGATCT
GTATGATATTGTAGGATTTAAAAGTAAGAAATGGGAGATATTGGAATTAC
TTATGCTGTACATAAATGATGGGGAATAGAGATTCAATGGATAAGCTCTG
AGACAATTAACTTTTACTGTTATTTATCTAACATAATTAATGACATCCAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_h13.g1 MSMg01no458_h13.g1 CHROMAT_FILE:
MSMg01no458_h13.g1 PHD_FILE: MSMg01no458_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:05 2005
         (329 letters)



>mm_chr3_24259163_24259891
          Length = 729

 Score =  464 bits (240), Expect = e-135
 Identities = 318/370 (85%), Gaps = 41/370 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttattttccactaaaaatcaccattaattagacaaatatactcttgtgattggtcaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttttattttccactaaaaaacaccattaattagacaaatatactcttgtgattggtcaa 379

                                                                       
Query: 61  tgcctggtcagcaactggatgcatgattaaattcacttgaggaaaacacagcgtagaaat 120
           |||||||||||||| ||||  ||||||||||||||||||||||||||||||| |||||||
Sbjct: 378 tgcctggtcagcaagtggaaccatgattaaattcacttgaggaaaacacagcatagaaat 319

                                                                       
Query: 121 ttgatcatagaaatacaaaaagctgttataaagctctattaaagaaatacagagaataaa 180
           |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||
Sbjct: 318 ttgatcatagaaatacaagaagctgttataaagctagattaaagaaatacagagaataaa 259

                                                                       
Query: 181 taaaatttcattttaaatagcaatagttatttaagaattcaaacttaccatatat----t 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 258 taaaatttcattttaaatagcaatagttatttaagaattcaaacttaccatatatttaat 199

                                                                       
Query: 237 tat-------------------------------------tactaaaagttcaaaaagtt 259
           |||                                     |||||||| |||||||||||
Sbjct: 198 tattcttttaaggatttgtctattgtcccatgctatttactactaaaaattcaaaaagtt 139

                                                                       
Query: 260 aaaatttgatctgtatgatattgtaggatttaaaagtaagaaatgggagatattggaatt 319
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 138 aaaatttgatctgtatgatatcataggatttaaaagtaagaaatgggagatattggaatt 79

                     
Query: 320 acttatgctg 329
           ||||||||||
Sbjct: 78  acttatgctg 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)