BAC Information

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BAC

Clone NameMSMg01-458I15
Chromosome3 (Build37)
Map Location 30,876,516 - 30,876,846
singlet/doubletsinglet
Overlap genenone
Upstream geneEvi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809
Downstream genePrkci, Skil, Cldn11, Slc7a14, LOC625125, Kcnmb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458I15.T7 (MSMg01no458_i15.b1)MSMg01-458I15.TJ (MSMg01no458_i15.g1)
ACCAG544345AG544346
length735757
length of high quality
(start - end)
328 (334 - 661)532 (74 - 605)
definitionCHROMAT_FILE: MSMg01no458_i15.b1 PHD_FILE: MSMg01no458_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:10 2005CHROMAT_FILE: MSMg01no458_i15.g1 PHD_FILE: MSMg01no458_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAGAGAGA
GCGCGGAATTCTCTGGTTTTCCTGAGCCGCAACTTTAAATTGGATTATTT
GGGTTGTTGGTATCTAGCTTCTTGAGTTCTTTATTCATTTTAGATATTAG
TCCTGGGTCAGAGATACAACCTTCTTTTACTAAACTGAGAATAATGTTTC
TGTCCCCTAGTTGTTGCGGTCCCCTCGGAAAGGTTACACATCAAAACAAC
AGTTGAGCTGGGCAGTGGTGGCACATTCCTTTAATCCCAACACTTAGGAG
GCAGAGGCAGGTGTATTTCTGAATTCATGNTCAGTCTGGTCTACAGAGTG
AGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAA
AAACAAAAACAACAACAACAACAAAAAAGTTGAGATCATGTAATGATCAA
AGCAATAGACCAACACCAATCCACCTGTAAATCCATGCAAAAAGGGAGAG
GGAGTTAGTTATACAAGGCCAGGTTAGAGAACTAAAAAAGAAAATGGAGC
AGAAACTCTTTGATACGTAATCTCAGAAGATAGGTTTGTGTGGCCTGAAA
CAGAAGCAGTCTGTTTCATTTAGAAGAGATGTTCCTCAGGACTAACATNA
AAACCCTTATCAAACACCTTATCAGGAGCTAACTGAAAGAGCCCTTGTTG
AAAAGCAATGGTCTCGACCTAAGTTCCAAGACAGC
CGATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTTAGATCTGTACCCCCTTTTAAAT
TTTGTTGTTTTCTTGATGTCTAGTTTTTTAAGTTCTTATATTAGATGTAG
AGTTAATAAAAATGTTTTCCCATTCTGTAGACTGCCACTTAGTCCAGTTG
ATGGTGTCCTTTGCCTTATGAACTGAAAAGCTTTTCAGTTTGATGAGTTC
CTTTTTTATTATTATTATAATTTTATATCCATTAGTATTTTCTTTTTCTT
CATGTTTGTGTGTGTGATTTTTTCTTATATTAGAGTTACAGACAGTTGTG
AGCTAATACTATGTGGGTGCTGGGAATTGAACCCAGGTCCTCAAGAAAAC
CAATCTGCTGTCAACCACTGAGTCATCTCTTTAGCCCTGAGGTCTCATTT
ATTAATTGTTTTTGGTGCCTGTGCTAATGGTGTTCTGTTCAGAAAGTCTT
CTTTGCCAGTGAGTTGAAGGCTATTCGTCACTTGCTCTTCTATCAGATTT
AGTGTATATGGCCTTATGTTGAGTTCTGATCCATTTGGAGCTGAGTTTTA
TGTAGGGCGATAAGTATGGATTGACTTTCATTCCTTCCTTTCCCACCACC
TCCCTTTTTTCTCTTCTCTCCCCTTTCCTTCCTTCCCCCCTATATTTTTT
CCTCCTTCATCCTTTTTTCTTTCCCCTTCCCTTCCCATTCCTTTTCTTTC
TCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_i15.b1 MSMg01no458_i15.b1 CHROMAT_FILE:
MSMg01no458_i15.b1 PHD_FILE: MSMg01no458_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:10 2005
         (328 letters)



>mm_chr3_30876242_30876969
          Length = 728

 Score =  603 bits (312), Expect = e-177
 Identities = 325/331 (98%), Gaps = 3/331 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtctggtctacagagtgagttccaggacagccagggctatacagagaaaccctgtctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gtctggtctacagagtgagttccaggacagccagggctatacagagaaaccctgtctcaa 546

                                                                       
Query: 61  aaaacaaaaacaaa---aacaacaacaacaacaaaaaagttgagatcatgtaatgatcaa 117
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaaacaaaaacaaaaacaacaacaacaacaacaaaaaagttgagatcatgtaatgatcaa 486

                                                                       
Query: 118 agcaatagaccaacaccaatccacctgtaaatccatgcaaaaagggagagggagttagtt 177
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 485 agcaatagaccaacaccaatccacctgtaaatccacgcaaaaagggagagggagttagtt 426

                                                                       
Query: 178 atacaaggccaggttagagaactaaaaaagaaaatggagcagaaactctttgatacgtaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atacaaggccaggttagagaactaaaaaagaaaatggagcagaaactctttgatacgtaa 366

                                                                       
Query: 238 tctcagaagataggtttgtgtggcctgaaacagaagcagtctgtttcatttagaagagat 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tctcagaagataggtttgtgtggcctgaaacagaagcagtctgtttcatttagaagagat 306

                                          
Query: 298 gttcctcaggactaacatnaaaacccttatc 328
           ||||||| |||||||||| ||||||||||||
Sbjct: 305 gttcctcgggactaacataaaaacccttatc 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)