Query= MSMg01no458_k17.b1 MSMg01no458_k17.b1 CHROMAT_FILE:
MSMg01no458_k17.b1 PHD_FILE: MSMg01no458_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:20 2005
(584 letters)
>mm_chr3_118325954_118326937
Length = 984
Score = 1052 bits (544), Expect = 0.0
Identities = 574/584 (98%)
Strand = Plus / Minus
Query: 1 cacgacaagtcccatggcaggctgactgacaaaaacttcactgtgaaatacaagtttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 cacgacaagtcccatggcaggctgactgacaaaaacttcactgtgaaatacaagtttaat 725
Query: 61 gcactgatggatatgtgtatcctgtctgggggctctttgctccacctccagcactatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gcactgatggatatgtgtatcctgtctgggggctctttgctccacctccagcactatcca 665
Query: 121 cagtggttgatgcctatgagatctccagttactatttggtaattgataaatctgtacaag 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 664 cagtggttgacgcctatgagatctccagttactatttggtaattgataaatctctacaag 605
Query: 181 tgtgattcaaactgatgtttagagtgtgcccagcatttaaatggatgaactaatttggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgtgattcaaactgatgtttagagtgtgcccagcatttaaatggatgaactaatttggat 545
Query: 241 ccagcattttttatgaatgacacattaaaagggtagaacaatgagtaaattctttaagac 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccagcatttaaaatgaatgacacattaaaagggtagaacaatgagtaaattctttaagac 485
Query: 301 agttcactgctgtgtgaattaacttctctcaaactgctgagctaatgcaccaaaatattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agttcactgctgtgtgaattaacttctctcaaactgctgagctaatgcaccaaaatattc 425
Query: 361 aggggatgctccgcagagttcacactttgtgtgaaggcagtagagaataaatcctaactt 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 424 aggggatgctccgcagagttcacactttgtgtgaaggcagtagataataaatcctaactt 365
Query: 421 cagtctttaatctgatttcttaaagaagtctagatgaatgctagcaggtgagaactatgt 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cagtctttaatctgattccttaaagaagtctagatgaatgctagcaggtgagaactatgt 305
Query: 481 aaaacatgtcttctaaaggaaaccaatatgaattttgatgtatatttaagactcatgaag 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 304 aaaacatgtcttctaaaggaaaccaatatgaatttcgatgtatatttaagactcatgaag 245
Query: 541 tcagcagttctagctttagatcttacatgagtgttcagccttcc 584
||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 244 tcagcagttctagctttaggtcttacatgagtgctcagccttcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_k17.g1 MSMg01no458_k17.g1 CHROMAT_FILE:
MSMg01no458_k17.g1 PHD_FILE: MSMg01no458_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:20 2005
(683 letters)
>mm_chr3_118140855_118141937
Length = 1083
Score = 1193 bits (617), Expect = 0.0
Identities = 672/702 (95%), Gaps = 19/702 (2%)
Strand = Plus / Plus
Query: 1 cattaattagttgattgttgagtaaactagcaataaaagaaacacactatgatatttgca 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cattaattagttgattattgagtaaactagcaataaaagaaacacactatgatatttgca 241
Query: 61 ttgctgttcaggtgtcattatctgcaactagttatattgcaaatcagaattctgttatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttgctgttcaggtgtcattatctgcaactagttatattgcaaatcagaattctgttatat 301
Query: 121 cctgatcaattatgatataagttaactaagagaacctgatcttcaacggttacattatta 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 302 cctgatcaattatgatataagttaactaagagaacctgatcttcaaaggttacattatta 361
Query: 181 aattaaatatataattatatat--taaatatataatgattaagtatataatgatatctgt 238
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 362 aattaaatatataattatatatattaaatatataatgattaagtatataatgatatctgt 421
Query: 239 acaagcattctaatgnatcatactat-----------------tccacagtatcataaaa 281
||||||||||||| | |||||||||| | |||||||||||||||
Sbjct: 422 acaagcattctaaggtatcatactatatgtgtatgataaaatatacacagtatcataaaa 481
Query: 282 tatacacatatatcaggatggttgaaatcaaaagttttttcaaatctaaaagtctaccct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tatacacatatatcaggatggttgaaatcaaaagttttttcaaatctaaaagtctaccct 541
Query: 342 tccactaattcaatactcaattgtaagaatgtaaagcaagccttgtaaaatttgttttgc 401
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 542 tccactaattcaatactcaattgtaagaatgtaaagcaagccttgtaacatttgttttgc 601
Query: 402 tgccttgaaattagtcctgaatctcacccgctaaacttcaaactaaaaagacagaatcat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgccttgaaattagtcctgaatctcacccgctaaacttcaaactaaaaagacagaatcat 661
Query: 462 aatctaattagtaatactctattcttgattcgtatgcagtttgtatcactgcatacttca 521
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aatctagttagtaatactctattcttgattcgtatgcagtttgtatcactgcatacttca 721
Query: 522 aagagatggcaaagtatatagtgaaggcaacagttacataattcaaaaatagtacatatt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 722 aagagatggcaaagtatatagtgaaggcaacagttacataattcaaaaatagtacgtatt 781
Query: 582 tacagcttgaatgataaatagatggtacgatttttgtcacagttgtatgtcattaaaaat 641
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tacagcttgaatgaaaaatagatggtacgatttttgtcacagttgtatgtcattaaaaat 841
Query: 642 taataatttcttaacttttgctcatatcattgttatcctaca 683
|||||||||||||||||||| || ||||||||||||||||||
Sbjct: 842 taataatttcttaacttttgttcttatcattgttatcctaca 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
