BAC Information

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BAC

Clone NameMSMg01-458K22
Chromosome3 (Build37)
Map Location 115,734,399 - 115,905,908
singlet/doubletdoublet
Overlap geneVcam1
Upstream geneOlfm3, EG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2
Downstream geneGpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458K22.T7 (MSMg01no458_k22.b1)MSMg01-458K22.TJ (MSMg01no458_k22.g1)
ACCAG544454AG544455
length823767
length of high quality
(start - end)		214 (76 - 289)534 (73 - 606)
definitionCHROMAT_FILE: MSMg01no458_k22.b1 PHD_FILE: MSMg01no458_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:21 2005CHROMAT_FILE: MSMg01no458_k22.g1 PHD_FILE: MSMg01no458_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,734,399 - 115,734,608)(115,905,375 - 115,905,908)
sequence
NGGGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGATCC
GCGGAATTCCCATGAAATTACGTGACAGAGTCTCTGTATCTCAGCATTTC
ATTGATTTCCGAGAAGAAAATATCAAAAACCCAATTGGGGTTTTATTTTT
TAGTTCTTTTTTGTTTGTTTGTTTTGCTTTTATCACAAGAAAGCAGCTTT
ATTTCATACCAGGTGTTAACTTGGACTAATCGTGTGTGTGTCTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNTNNNNNTNNTNNNT
NNNTTTTNNNNNTNCNNNNNNNNTTTTTTTTTTTTTCNNNCNNNCNCCCC
NCCCCCCCCNCCCCCTTTTTCCCCCCCCCTCTCTTCTTCCCTCTCTTTTC
TTTTCTCCTTTTTTTTTTTTCCCCCCCCCCCCCCTCCCTCTTCCTCCTTC
TCCTCCTTTCTTCTTTCTCCTTTTTCCTCTCTTTTTTCCTCTCTCCTTCC
CTCTTTTTTTCTCTTTCCCCCTCCTTTCTTCCTCCTCCCTTTTTTCTCTT
TTCTTCTTCTTTTTCCTCCTCCCCCTTCTCCCTCTCTCTTCTTCCCCTTT
TCCTCTCNTTTCTTTCTCTCTCTTCCTTTCTCTCTCTTCTTTCTCTTCTT
TCTTTCCTCCTCTCCTTCTCTCTCCCTTTCTCCTCTTTTCTTCTTCCCTT
TTTTCTCTCTTTTTCTTTCTCTTTTCTTTCCCCTCTTCCCTCTCCCTCTC
CTCTTCTTTTCCTCTTTCCTTCTCCTCTCCTTTTCCCCCTTCTTTCCCTC
CTCCNCCCTCCCTCTTTTTCCCN

CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGATGAAGGAAACAAAACCGAGACAAT
GCAATTGATACAGTGAGAAAGGAATATAGCATCCTTTACCCATTGAGCTG
TTTACTAATTCAGTGGGTTAGTCTATAAAGCTAGGGGTCATATACAACTC
GAAGGGTATTTGTGAGGCTCTCGAAAGTAGCTGTACACCTATAAATGGTG
GCTCTGGAGCTGTGCAATGGCCTACCTCACTCTTGGGTGTAGACTCTGGC
TACCTGTGTGCAGGATGCTGGGTGATCGTCCTGAATTGAATAGAATGTAC
CCACCCACATACACCTCTCCTGCCAATCAGGGCCACACCAGGACTACTGG
ATACCTGTGTAGGGGAGAGATTGTGCTTTCCTTTAGAATGAAGCTGAGTT
CCAGTGAGTAGGCGCACTCCTTCCTATCCAGCTCAGAGCGATTCAGCCCC
GGGGCTACCAGTCTCCACCTCTTTAGAAGATTGTTCAGCTTGCCTCCTTG
ATGTTTGCTTCTTTATTCAGAGACATCTCTTCTCTCCCCTTCACACTTTA
CTATGTTAAAAAAGAAGGTCCACGTGGTACGTAGCTAGTTAAAAAAGAGC
GAGCTTTTAGGTCACTGAAGTTGGACCCCCTCCTCATCATTAACTCTGGA
CCTTGTCTCCCGGTTCCCCGGGAACACAGCCCTTTTAGTGGAAAAGAACC
TATCTGGGGTGGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_k22.b1 MSMg01no458_k22.b1 CHROMAT_FILE:
MSMg01no458_k22.b1 PHD_FILE: MSMg01no458_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:21 2005
         (214 letters)



>mm_chr3_115734199_115734812
          Length = 614

 Score =  406 bits (210), Expect = e-118
 Identities = 210/210 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagtctctgtatctcagcatttcattgatttccgagaagaaaatatcaaaaacccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagtctctgtatctcagcatttcattgatttccgagaagaaaatatcaaaaacccaat 260

                                                                       
Query: 61  tggggttttattttttagttcttttttgtttgtttgttttgcttttatcacaagaaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggttttattttttagttcttttttgtttgtttgttttgcttttatcacaagaaagca 320

                                                                       
Query: 121 gctttatttcataccaggtgttaacttggactaatcgtgtgtgtgtctgtgtgtgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttatttcataccaggtgttaacttggactaatcgtgtgtgtgtctgtgtgtgtgtgt 380

                                         
Query: 181 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 210
           ||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no458_k22.g1 MSMg01no458_k22.g1 CHROMAT_FILE:
MSMg01no458_k22.g1 PHD_FILE: MSMg01no458_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:21 2005
         (534 letters)



>mm_chr3_115905175_115906108
          Length = 934

 Score = 1017 bits (526), Expect = 0.0
 Identities = 532/534 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggatgaaggaaacaaaaccgagacaatgcaattgatacagtgagaaaggaatatagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aggatgaaggaaacaaaaccgagacaatgcaattgatacagtgagaaaggaatatagcat 675

                                                                       
Query: 61  cctttacccattgagctgtttactaattcagtgggttagtctataaagctaggggtcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cctttacccattgagctgtttactaattcagtgggttagtctataaagctaggggtcata 615

                                                                       
Query: 121 tacaactcgaagggtatttgtgaggctctcgaaagtagctgtacacctataaatggtggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tacaactcgaagggtatttgtgaggctctcgaaagtagctgtacacctataaatggtggc 555

                                                                       
Query: 181 tctggagctgtgcaatggcctacctcactcttgggtgtagactctggctacctgtgtgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tctggagctgtgcaatggcctacctcactcttgggtgtagactctggctacctgtgtgca 495

                                                                       
Query: 241 ggatgctgggtgatcgtcctgaattgaatagaatgtacccacccacatacacctctcctg 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggatgctgggtgaacgtcctgaattgaatagaatgtacccacccacatacacctctcctg 435

                                                                       
Query: 301 ccaatcagggccacaccaggactactggatacctgtgtaggggagagattgtgctttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccaatcagggccacaccaggactactggatacctgtgtaggggagagattgtgctttcct 375

                                                                       
Query: 361 ttagaatgaagctgagttccagtgagtaggcgcactccttcctatccagctcagagcgat 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcagaatgaagctgagttccagtgagtaggcgcactccttcctatccagctcagagcgat 315

                                                                       
Query: 421 tcagccccggggctaccagtctccacctctttagaagattgttcagcttgcctccttgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcagccccggggctaccagtctccacctctttagaagattgttcagcttgcctccttgat 255

                                                                 
Query: 481 gtttgcttctttattcagagacatctcttctctccccttcacactttactatgt 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtttgcttctttattcagagacatctcttctctccccttcacactttactatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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