Query= MSMg01no459_a13.b1 MSMg01no459_a13.b1 CHROMAT_FILE:
MSMg01no459_a13.b1 PHD_FILE: MSMg01no459_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:47 2005
(510 letters)
>mm_chr3_141893270_141894178
Length = 909
Score = 855 bits (442), Expect = 0.0
Identities = 478/490 (97%), Gaps = 1/490 (0%)
Strand = Plus / Minus
Query: 5 gaattccaccagatctctttgaagagtttaatggcgatgtgggcagcagggagtggaaaa 64
||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 489 gaattccactagttttctttgaagagtttaatggtgatgtgggcagcagggagtggaaca 430
Query: 65 gggttggcagatcaggagtgcctgcaccagaagtccaaatgcctgcaatgccatgaacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gggttggcagatcaggagtgcctgcaccagaagtccaaatgcctgcaatgccatgaacca 370
Query: 125 aagaagagtttggaatcttattaaatctcaaatgacatttgaggtggaccctagtcttaa 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aagaagagtttggaatctgattaaatctcaaatgacatttgaggtggaccctagtcttaa 310
Query: 185 acttcatggaccaatacatcagcatctctagtgaaagtcaaagggatggattcttcaggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acttcatggaccaatacatcagcatctctagtgaaagtcaaagggatggattcttcaggc 250
Query: 245 tgctctagaagtggctctttaccagttcccaccagtgctttcttcttatgccagctagtt 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 249 tgctctagaagtggctctttaccag-tcccaccagtgctttcttcttatgccagctagtt 191
Query: 305 gtatgttaattctgcctaaaccagagtcattttggaagagggaatctcagttgagaaaat 364
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttatgttaattctacctaaaccagagtcattttggaagagggaatctcagttgagaaaat 131
Query: 365 gcccccacgagcttggctcctgggcaaacctgtggtgacttttcttgattgatgatcgat 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 130 gcccccacgagcttggctcctgggcaaacctgtggtgacttttcttgattgatgatcgtt 71
Query: 425 gtggaaaagcccagcacactgtggctagtgccatccctgggttagtatacctggacacca 484
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 70 gtggaaaagcccagcacactatggctagtgccacccctgggttagtatacctggacacca 11
Query: 485 taggaaagca 494
||||||||||
Sbjct: 10 taggaaagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 909
Length adjustment: 10
Effective length of query: 500
Effective length of database: 899
Effective search space: 449500
Effective search space used: 449500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no459_a13.g1 MSMg01no459_a13.g1 CHROMAT_FILE:
MSMg01no459_a13.g1 PHD_FILE: MSMg01no459_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:47 2005
(460 letters)
>mm_chr3_141748365_141749227
Length = 863
Score = 835 bits (432), Expect = 0.0
Identities = 452/460 (98%), Gaps = 3/460 (0%)
Strand = Plus / Plus
Query: 1 ctctcacccaaaaggagaaaaagaaaacttgtttgacacccccaggtacagattgtccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctcacccaaaaggagaaaaagaaaacttgtttgacacccccaggtacagattgtccag 260
Query: 61 cttctcacctgaggctactcaaaca---ccagccctcctaaatggttctcaagagtttcc 117
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 cttctcacctgaggctactcaaacaacaccagccctcctaaatggttctcaagagtttcc 320
Query: 118 cacaaacccctcggagacattggaaaatcccaaacatcaactgttgttaactttcttcat 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaacccctcggagacattggaaaatcccaaacatcaactgttgttaactttcttcat 380
Query: 178 atcatttttgctttaaatcaaggctcgaagccatagtgagactttcaacagtgttgggca 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatttttgctttaaatcaaggctcgaagccatagtgagactttcaacagtgttgggca 440
Query: 238 attggcactttgtgtcgctaatggagaactctgtgtcctgggcatctaccacatttagat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attggcactttgtgtcgctaatggagaactctgtgtcctgggcatctaccacatttagat 500
Query: 298 aaatggaaaatgtctcgtggtaaacaagcttttaggctgactccgccacattcaaacaaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatggaaaatgtctcgtggtaaacaagcttttaggctgactccgccacattcaaacaaa 560
Query: 358 gtcaaatggtaggagggaatactaaccgatgtctatcactcctaatcctcagccccccca 417
||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||
Sbjct: 561 gtcaaatggtaggagggaatactaacccatgtctatcactcctaaccctcaacaccccca 620
Query: 418 aggtatcatgaaaggagggaaagagctcagagaataaata 457
||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtatcatgaaaggagggaaagagctcagagaataaata 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 863
Length adjustment: 10
Effective length of query: 450
Effective length of database: 853
Effective search space: 383850
Effective search space used: 383850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
