BAC Information

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BAC

Clone NameMSMg01-459J05
Chromosome3 (Build37)
Map Location 79,065,372 - 79,065,718
singlet/doubletsinglet
Overlap geneLOC100041741
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459J05.T7 (MSMg01no459_j05.b1)MSMg01-459J05.TJ (MSMg01no459_j05.g1)
ACCAG545135AG545136
length727747
length of high quality
(start - end)
310 (45 - 354)348 (72 - 419)
definitionCHROMAT_FILE: MSMg01no459_j05.b1 PHD_FILE: MSMg01no459_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:33 2005CHROMAT_FILE: MSMg01no459_j05.g1 PHD_FILE: MSMg01no459_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGATTTCCGCTTACTCTGGTCAGCCCCACTCCCTCTGGCTTAAAG
ATTTATTCATTATCATATGTAAGTACACTGTAGCTGTCTTCAGAAGCACA
AGAAGAGGGCATCAGATCTCATTATAGATGGTTATGGCTGCTGGGATTTG
AACTCAGGACTGTTGGAAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATC
TCTCCAGCCCGAATGTGGTGAGTTTTAAAAACAGTAAATCTGTTAATACA
ACGATCATGCAAATGTTTTCATTTATTATGGAAACTATTTAGTACATGAA
TTGTTAGGAATTATTTTTGAAGGGGGCTGATTCATATAGAATGAAAACCG
TAGTTACGTTGAGCCGGTAAAAACTTTCGGGCTTGTAAGGAGTGAGGGTG
GCTCCTCCCCAGTTCTTGGATTCGCGTTTTAAGCTTGGGCCTAATTGGGT
GTCCCCCATCTTACCCTTTCAAAAACGGGTTTTCCTCTCCTCGCCCCCTA
CTTTCTTTTTTTTTCCGACACACCACCTATTTTGGGGCCTTAGAAAACCT
TTTTTAACAACCCCCGCAAAAATAAGCGTCTTCCTTTCTCATTTTCTTTC
CCTAAGTGTATTGTTTCTTTCCCCCTTTCTTTCCCGCTTGGCTTTTTCTT
TATCTTTCGGGCCCTGCCTCCCTACTT
ATGAAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGTGTAGCCTAGGTTGGACATGAACTT
ATCCTCTTGCTTCCATATTCTGAGTGCAAGGATTTCAGGCACGTGCCACT
GTACCTGGCTCCAGCATCCCTTTATGATTGGACCTCACAGTCTCAATGAC
CGAATGAAAGACAGATTTAACTTGATGTGTTTGGGATTGTGAGCTCTCAA
GGAGTCCTAGCTGCTTCTGAAGTCCTAAAGTAATCCCTTCTGATGTTTGG
TTGTTGTACTGGTTGGTTGTGTGTGTCAACTTGACACATGCTGGAGTTAT
CACAGAGAAGGGAGCTTCAGCTGGGGAAGTGCCTCAATGAGGTCCAGCTG
TGGGGCATTTTCTCAATTAGTGATCAAGAGGGAAAGGCCCATTGTGAGCG
GTGCTATCTCTGGGCTGGCAGTCTTGGTCTTATAAGAGACGCAGCTGTAC
TTGTCCGCGTAAGCCCGCCACCATTGAATATTCCCCCACTGGCCTCTGCA
ACAACTTCTGTTTTCCTGCACTGCTTCATTCTCCCCACCGGACCCCCCCT
CGTTTACTTATCCCTCTTTTCACTTGTCTTGTGTATTTTTCCCCCCGTCC
TACACTTTAACCCCTAACTTTTCTCTCTTTTTTTCTCTCTACTTTCCCCC
CTTTCCTCCCCACTCTCTTTTCCCCCCCTTATCCCTCTTTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_j05.g1 MSMg01no459_j05.g1 CHROMAT_FILE:
MSMg01no459_j05.g1 PHD_FILE: MSMg01no459_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:33 2005
         (348 letters)



>mm_chr3_79065286_79066033
          Length = 748

 Score =  605 bits (313), Expect = e-177
 Identities = 340/349 (97%), Gaps = 3/349 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgtagcctaggttggacatgaacttatcctcttgcttccatattctgagtgcaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 actgtgtagcctaggttggacatgaacttatcctcttgcttccatattctgagtgcaagg 374

                                                                       
Query: 61  atttcaggcacgtgccactgtacctggctccagcatccctttatgattggacctcacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atttcaggcacgtgccactgtacctggctccagcatccctttatgattggacctcacagt 314

                                                                       
Query: 121 ctcaatgaccgaatgaaagacagatttaacttgatgtgtttgggattgtgagctctcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctcaatgaccgaatgaaagacagatttaacttgatgtgtttgggattgtgagctctcaag 254

                                                                       
Query: 181 gagtcctagctgcttctgaagtcctaaagtaatcccttctgatgtttggttgttgtactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagtcctagctgcttctgaagtcctaaagtaatcccttctgatgtttggttgttgtactg 194

                                                                       
Query: 241 gt-tggttgtgtgtgtcaacttgacacatgctggagttatcacagagaagggagcttcag 299
            | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 193 -tctggttgtgtgtgtcaacttgacaca-gctggagttatcacagagaagggagcttcag 136

                                                            
Query: 300 ctggggaagtgcctcaatgaggtccagctgtggggcattttctcaatta 348
            ||||||| |||||| ||||| ||||||| || ||||||||||||||||
Sbjct: 135 ttggggaaatgcctccatgagatccagctatgaggcattttctcaatta 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)