BAC Information

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BAC

Clone NameMSMg01-459L07
Chromosome3 (Build37)
Map Location 55,253,023 - 55,253,363
singlet/doubletsinglet
Overlap geneDclk1
Upstream geneLOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2
Downstream geneMab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459L07.T7 (MSMg01no459_l07.b1)MSMg01-459L07.TJ (MSMg01no459_l07.g1)
ACCAG545235AG545236
length912769
length of high quality
(start - end)
---346 (80 - 425)
definitionCHROMAT_FILE: MSMg01no459_l07.b1 PHD_FILE: MSMg01no459_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:43 2005CHROMAT_FILE: MSMg01no459_l07.g1 PHD_FILE: MSMg01no459_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATCAAATTTTAGGTCCGAAACCGCGGGGCTTTCTGTGGGGCGGCGGGA
GACTGTGGGTGCACTACGAGACAGGAAGGATAAGGTATAGTGGGGTGGCG
GCCGGTTGTCGGTCGGCGCCGTGGCGGGGCGATGGCCGCGTGGGTCGTGC
ATCCCGCATAGGTATGAGATTGCTTTCTCGTCTCCAATATAAGTAGGGTA
TATAGAGGCAATGAAATGTGTGTGGGCTTCTTTGGGGGGCGTTGTGGGGA
TGGTGCGGGTGTTATCGGGGTGCTAATTAAGGAGTGGGGGGGGCAGTGGT
AGGTAGTAAATCGAGCGAGTGACAGAGTTAGCCGGTGAGGCGCGTAAATC
GTCCTCCTCCGCGCGCCCGCTCTAGTTTTAAGTGTTTGAATGTCCTCTCG
TGCACGATGATACCAGGATACGGCATGATACGCGGGGGGTAGATATTTGG
GAAAAGAGTAGAGAAGGAAAGGCACGGGGTCGGGTGTCCCTTCTCTAAAT
GCATCACGTATCATTTGCCGGCCATCGCAGCGATGTCTAGTTATACTTTA
TCGAGTATAGTTAACTAGTTGGGGTGTATATATGGCTGCGGAGCGGGGAT
TGTACAGGACGGTGGGGGAGGAGGTATCGAGGGGGTAGGAGAGCGAACGG
TCGGGCGGTGGAGGTAAGAGGTGCGCGCTGCTGGGATGGGTAGTATCGAC
AGTTAGATGCTGGACTGAGGGTAGATTCGCGAAGAGCGGAAGGATATCCC
AGTCGCGGTGGGGAGAGGGGGGGGGAAGGGTTGAGGCCGTCGGTGTGGTT
GACGGTGACGAGCGGTGTGGATGCGGTATATTGTTAAAGTGTTTCCGGGC
GTGTCAACTCGCGGTAAAACGATTTAACATTTAGCCGGAGTCGGGAAATG
ATACGCATCGTT
TTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTTAAATTATTTCTTAA
AAATGTACCTTTCTGTGTTTGTGAATGAGTACCTGCTTGCCTGTATGCCC
ACCATATGCATGCAGTGCCCATGGAGACCAGAAGAGGGCACTGGATCTCC
TGGATCTCGAGTGACCAATGGTTGTGATCTGCCATGTGCTCTGCTGGGAA
CTCAACCACTAACTGTTAAGTCATTCCTCCAGCTCCCATAAATTCTTAAA
AAGTCCTTGTCCTCTATTTGGTGTCTCACTCAAATCATGCTTTCATTAGC
ATATGATCATTTTTTTTTCTGATCTCTTGTGCTTTAGCGTTATTGTTCTA
ATTTATTTTTGGAATTTTTCTAAGCAAAATTAAGATATCATTGCTTAAGA
CCTGAAGTGGGTTTGTTGACCACAATGTTGCACGTTTTGTTTTTCTCTCC
CCACCCCCCTTCCCCCACCCGGCTTCCCTTCTTTTCACAGACCCAATTTC
CGGCCCTTCGTTCGCTCGATCTTAACCATACCTTTTTACTTCTAGCTTGC
TTCCAAAAAAATCCCTTCTTTCTCACCATCACTCCCCTTATCTTCTTTTC
CCCCCCCCCATATTCTCTTTCTCCTCCTTACCTTTCCCTTTCTTCATTCC
TTCTCCTTTTTTTCTCCCTTCCCCTCCTTTCTTCTCTTTATCTCCCCCCT
TTTCCCTTCTTATCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_l07.g1 MSMg01no459_l07.g1 CHROMAT_FILE:
MSMg01no459_l07.g1 PHD_FILE: MSMg01no459_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:43 2005
         (346 letters)



>mm_chr3_55252636_55253382
          Length = 747

 Score =  590 bits (305), Expect = e-173
 Identities = 334/347 (96%), Gaps = 7/347 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccttaaattatttcttaaaaatgtacctttctgtgtttgtgaatgagtacctgcttg 60
           |||||||||||||| ||||||||||||||||||||||||||||||      |||||||||
Sbjct: 728 tctccttaaattatctcttaaaaatgtacctttctgtgtttgtga------acctgcttg 675

                                                                       
Query: 61  cctgtatgcccaccatatgcatgcagtgcccatggagaccagaagagggcactggatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cctgtatgcccaccatatgcatgcagtgcccatggagaccagaagagggcactggatctc 615

                                                                       
Query: 121 ctggatctcgagtgaccaatggttgtgatctgccatgtgctctgctgggaactcaaccac 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 614 ctggatctcgagtgaccaatggttgtgatctgccatgtggtctgctgggaactcaaccat 555

                                                                       
Query: 181 taactgttaagtcattcctccagctcccataaattcttaaaaagtccttgtcctctattt 240
           |||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 554 taacggctaagtcattcctccaactcccataaattcttaaaaagtccttgtcctctattt 495

                                                                       
Query: 241 ggtgtctcactcaaatcatgctttcattagcatatgatca-tttttttttctgatctctt 299
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 494 ggtgtctcactcaaatcatgctttcattagcatatgatcattttttttttctgatctctt 435

                                                          
Query: 300 gtgctttagcgttattgttctaatttatttttggaatttttctaagc 346
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtgctttagcgttattgttctaatttatttttggaatttttctaagc 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 747
Length adjustment: 9
Effective length of query: 337
Effective length of database: 738
Effective search space:   248706
Effective search space used:   248706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)