Query= MSMg01no460_b14.b1 MSMg01no460_b14.b1 CHROMAT_FILE:
MSMg01no460_b14.b1 PHD_FILE: MSMg01no460_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:15 2005
(538 letters)
>mm_chr3_143852707_143853644
Length = 938
Score = 978 bits (506), Expect = 0.0
Identities = 530/538 (98%)
Strand = Plus / Minus
Query: 1 agaggtgtgagggaactttgtgcttcagtgggaggaagaggtagcaaagcttcctaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agaggtgtgagggaactttgtgcttcagtgggaggaagaggtagcaaagcttcctaggtt 679
Query: 61 acgggtcacctcacggcttcccgtggttacataattggtgttgtatacgtccatcttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acgggtcacctcacggcttcccgtggttacataattggtgttgtatacgtccatcttgga 619
Query: 121 ggacatctgatgctcatttattaaatatgcttgctggctgctgctgcgtcttcgttctgg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 618 ggacatctgatgctcatttattaaatatgcttgctggctgctgctgcgtcttcgttttgg 559
Query: 181 acagacaaattgcctttctcacactgggcttccactctggggagttgagcctgcgccact 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acagacaaattacctttctcacactgggcttccactctggggagttgagcctgcgccact 499
Query: 241 ttaattatctcggaagtggggtttgtagacttgggcctttggtaagttaggggaaggctg 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 498 ttaattagctcggaagtggggtttgtagacttgggcctttggtaagttaggggcaggctg 439
Query: 301 tacagaggacttcctgagatgctccacgtgtaatttagagaaacccttcaaaccctgagt 360
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cacagagaacttcctgagatgctccacgtgtaatttagagaaacccttcaaaccctgagt 379
Query: 361 gacattattccacgttggtaattgcacaccgcttttgtctggcagctgtgtgttgccatt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 378 gacattattccacgttggtaattgcacaccgcttgtgtctggcagctgtgtgttgccatt 319
Query: 421 cataccctcacatgttggagctaaggtctctcgctggaccgtgcccttccgtctatctcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 318 cataccctcacatgttggagctaaggtctctcgctggaccgtgcccttccgtctacctcg 259
Query: 481 ggtcattagcacatcctgtgtgctgatttctgtgcctgtaatatgtatgtaacgttat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggtcattagcacatcctgtgtgctgatttctgtgcctgtaatatgtatgtaacgttat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_b14.g1 MSMg01no460_b14.g1 CHROMAT_FILE:
MSMg01no460_b14.g1 PHD_FILE: MSMg01no460_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:15 2005
(569 letters)
>mm_chr3_143679283_143680249
Length = 967
Score = 1004 bits (519), Expect = 0.0
Identities = 556/569 (97%), Gaps = 2/569 (0%)
Strand = Plus / Plus
Query: 1 tatatccagcaaaactatcttttaatacattccagatgagtaggagctaagtttgtgaat 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatccagcaaaactatctttcaatacattccagatgagtaggagctaagtttgtgaat 260
Query: 61 agctagcttgtcctgcaagagtcatgaaagacaatcctagttgaattgaaagaacattag 120
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 agctagcttgtcctacaagagtcatgaaaggcaatcctagttgaattgaaagaacattag 320
Query: 121 atagcaaatgaatgtttgtaaataagtgagtaaagatcataatacaggaaaactttaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagcaaatgaatgtttgtaaataagtgagtaaagatcataatacaggaaaactttaaag 380
Query: 181 actgcagatttatctgctttacattttcccctataatatttaagactatttcttcaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 --tgcagatttatctgctttacattttcccctataatatttaagactatttcttcaagta 438
Query: 241 ataatgtccaatttctactaatgagcaaataatgtgtagtcatattatttatgaaacagc 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 439 ataatgtccaatttctactaatgagcaaataatgtatagtcatattatttatgaaacagc 498
Query: 301 aacatgatgaggggacaaggataaagttatagaatactaaagtttgtgaacatcattaaa 360
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 499 aacatgatgaggggacaaggatagagttatagaatactaaagtttgtgtacatcattaaa 558
Query: 361 atcaagataatagtaatataaactaaattgtggtgaaataaatactaatttggaagattc 420
|||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 559 atcaagataatagtaacataaactaaattgtggtaaaataaatattaatttggaagattc 618
Query: 421 aaaatccataaaacaaagtccttctgctctttttatggttgtatactatccattgtatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaaatccataaaacaaagtccttctgctctttttatggttgtatactatccattgtatgg 678
Query: 481 ctatactacattttattacataacagcctaattttgaaaatgtcaaagaagctagacaca 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttatactacattttattacataacagcctaattttgaaaatgtcaaagaagctagacaca 738
Query: 541 aaagccacctatttcatgattgaacttgc 569
|||||||| ||||||||||||||||||||
Sbjct: 739 aaagccacatatttcatgattgaacttgc 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 967
Length adjustment: 10
Effective length of query: 559
Effective length of database: 957
Effective search space: 534963
Effective search space used: 534963
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
